G130365 (LOC107575789,LOC100846954)


Basic Information

Item Value
gene id G130365
gene name LOC107575789,LOC100846954
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 23280811 ~ 23281334 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU163399
agccactccaggaccttaatgtgcttcttcttgagccactcctttgttgccttggctgtgtgttttgggtcattgtcatgctggaataccatccaagacccattttcaatgccctggctgagggaaggaggttctcacccaagatttgacggtacatggccccgtccatcatccctttgatgcggtgcagttgtcctgtccccttagcagaaaaacacccccaaagcataatgtttccacctccatgtttgacggtggggatggtgttcttggggtcattcctcctcctccaaacacggcgagttgagttgacaCTTTCACctagttctcctctgaatcattcagatgttggcaaacttcagacggtcctgtacatgtgctttcttgaacAGGGGGGCCTTGCGggcactgcaggatttcagtgcTTCACGGCATAGTGTGTAACccattgttttcttggtgactatggtctcagctgccttgagatcattaagaagatcctcccgtgtagttctgggctgatt

Function

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase zeta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU163399 True 524 lncRNA 0.50 1 23280811 23281334

Neighbor

gene id symbol gene type direction distance location
AMCG00001285 NA coding upstream 160856 23100907 ~ 23119955 (+)
AMCG00001284 NA coding upstream 247312 23031304 ~ 23033499 (+)
AMCG00001279 NA coding upstream 527955 22646113 ~ 22752856 (+)
AMCG00001276 NA coding upstream 673556 22584027 ~ 22607255 (+)
AMCG00001275 ercc3,LOC107706662 coding upstream 715191 22551140 ~ 22565620 (+)
AMCG00001294 ino80d,LOC106582458 coding downstream 440489 23721823 ~ 23759069 (+)
AMCG00001300 NA coding downstream 621994 23903328 ~ 23913809 (+)
AMCG00001298 NA coding downstream 667115 23948449 ~ 23990082 (+)
AMCG00001297 tmem198a coding downstream 791095 24072429 ~ 24090849 (+)
AMCG00001299 dnpep,LOC106573845 coding downstream 898916 24180250 ~ 24207621 (+)
G130348 NA non-coding upstream 56214 23224032 ~ 23224597 (+)
G130346 NA non-coding upstream 63311 23214937 ~ 23217500 (+)
G130166 NA non-coding upstream 475753 22799097 ~ 22805058 (+)
G130160 NA non-coding upstream 655608 22624958 ~ 22625203 (+)
G130144 NA non-coding upstream 664654 22615284 ~ 22616157 (+)
G130461 NA non-coding downstream 447671 23729005 ~ 23729229 (+)
G130492 NA non-coding downstream 574386 23855720 ~ 23856116 (+)
G130531 NA non-coding downstream 641877 23923211 ~ 23923877 (+)
G130530 NA non-coding downstream 643544 23924878 ~ 23926011 (+)
G130552 NA non-coding downstream 771488 24052822 ~ 24120461 (+)
G130335 NA other upstream 114155 23166263 ~ 23166656 (+)
AMCG00001278 ercc3,LOC107706662 other upstream 749975 22500035 ~ 22530836 (+)
AMCG00001269 trak2,LOC107582328,LOC106573853 other upstream 1042157 22189908 ~ 22238654 (+)
AMCG00001260 NA other upstream 1288479 21971299 ~ 21992332 (+)
G129913 NA other upstream 2003932 21271384 ~ 21276879 (+)
AMCG00001292 ndufs1,LOC107555450,LOC107748553 other downstream 283817 23565151 ~ 23685121 (+)
AMCG00001312 tuba4a,tuba8l4,tba1a,si:ch211-114n24.6,LOC108251627,LOC107714908 other downstream 1143231 24424565 ~ 24446233 (+)
G130616 si:ch211-114n24.6,LOC107581306,LOC108436424,LOC101061790,LOC103034569 other downstream 1152459 24433793 ~ 24454385 (+)
AMCG00001315 NA other downstream 1302845 24584179 ~ 24606472 (+)
AMCG00001331 NA other downstream 2142353 25423687 ~ 25450310 (+)

Expression


Co-expression Network