G130530


Basic Information

Item Value
gene id G130530
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 23924878 ~ 23926011 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU163590
GGAAAGCAAAACATAGAGGCTGCCAAAGATGTCCCTGATCAATTCTGTCGCTTTGTCCTCAGTCCTGGAGACTCGGAGGGACCAACACAAAATCTGGTCCCAAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGTTACACTGAAGGCTGACAATGGCATGTTCTGGTGCAGTGTTGATAGCGGTCCCAAGGTGAACAACGTTGAGGCTGTCAAGTCAGTGCCAGATGAGTGGTGCCATTTCAAGGTGTTGAAAGCCCATAATGGGAAGATCCTGCTAAGGGACAAGAGAGGCGTGTATCTCAGTAGAATTAACTATGGGGGCATTGGTGGGNNN

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU163590 True 342 lncRNA 0.45 2 23924878 23926011

Neighbor

gene id symbol gene type direction distance location
AMCG00001300 NA coding upstream 11069 23903328 ~ 23913809 (+)
AMCG00001294 ino80d,LOC106582458 coding upstream 165809 23721823 ~ 23759069 (+)
AMCG00001285 NA coding upstream 804923 23100907 ~ 23119955 (+)
AMCG00001284 NA coding upstream 891379 23031304 ~ 23033499 (+)
AMCG00001279 NA coding upstream 1172022 22646113 ~ 22752856 (+)
AMCG00001298 NA coding downstream 22438 23948449 ~ 23990082 (+)
AMCG00001297 tmem198a coding downstream 146418 24072429 ~ 24090849 (+)
AMCG00001299 dnpep,LOC106573845 coding downstream 254239 24180250 ~ 24207621 (+)
AMCG00001309 NA coding downstream 330825 24256836 ~ 24286635 (+)
AMCG00001302 ptprn,ptprnb,LOC107748541 coding downstream 396660 24322671 ~ 24351647 (+)
G130531 NA non-coding upstream 1001 23923211 ~ 23923877 (+)
G130492 NA non-coding upstream 68762 23855720 ~ 23856116 (+)
G130461 NA non-coding upstream 195649 23729005 ~ 23729229 (+)
G130365 LOC107575789,LOC100846954 non-coding upstream 643544 23280811 ~ 23281334 (+)
G130348 NA non-coding upstream 700281 23224032 ~ 23224597 (+)
G130552 NA non-coding downstream 126811 24052822 ~ 24120461 (+)
G130648 NA non-coding downstream 825108 24751119 ~ 24751414 (+)
G130684 NA non-coding downstream 1096668 25022679 ~ 25023049 (+)
G130689 NA non-coding downstream 1130610 25056621 ~ 25056978 (+)
G130692 NA non-coding downstream 1160650 25086661 ~ 25086898 (+)
AMCG00001292 ndufs1,LOC107555450,LOC107748553 other upstream 239757 23565151 ~ 23685121 (+)
G130335 NA other upstream 758222 23166263 ~ 23166656 (+)
AMCG00001278 ercc3,LOC107706662 other upstream 1394042 22500035 ~ 22530836 (+)
AMCG00001269 trak2,LOC107582328,LOC106573853 other upstream 1686224 22189908 ~ 22238654 (+)
AMCG00001260 NA other upstream 1932546 21971299 ~ 21992332 (+)
AMCG00001312 tuba4a,tuba8l4,tba1a,si:ch211-114n24.6,LOC108251627,LOC107714908 other downstream 498554 24424565 ~ 24446233 (+)
G130616 si:ch211-114n24.6,LOC107581306,LOC108436424,LOC101061790,LOC103034569 other downstream 507782 24433793 ~ 24454385 (+)
AMCG00001315 NA other downstream 658168 24584179 ~ 24606472 (+)
AMCG00001331 NA other downstream 1497676 25423687 ~ 25450310 (+)
AMCG00001337 sumo1 other downstream 1809544 25735555 ~ 25749501 (+)

Expression


Co-expression Network