G130552


Basic Information

Item Value
gene id G130552
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 24052822 ~ 24120461 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU163619
aaaaaaaaagaaaaaaaaaaagagtgtaGCTCCCTGAGTTTGAGAGTGCCAAACATGCAAGTAACACACCACAGAGTTTGACTACAAAGATTGGAAGATGCTGTTTAGCCATTAAATCAGAAAACTTACAGATAAGTTGCCTACTGGAAGCTAGcctggttaaaaaataaacaaacacaattcaataataataataataataataataataataataataataataacttgtcACCTAGATATAACAagagtttatttatattatacattgtttAACTGCAATCAGATTAAATGCATGGGATCCTCTTCTCCTTTCCAAGAACATCATGAAGGAAGATGAAATTCCTGTAACCTCAATTGAACATCTATCCTTTATAATTTACTGTAACTAAAAAAAATTCCTGGACTTTCAAGTGCTGTGCTTTTTACAGTCAATTTAGTCAGTACTGTGTCTCTCAGCTCAATAACCTGGTGTGCTGCTataaattcaatgtatttaatgtgcttGCTGAGAAGTGTTCGTTGTGTGTCTCTTACTGTAATtgacacaagaaaaaaataaaaaaataattgaagtcATTTAGCTATCTTTTATGCTGTCTTTCATGTTGATATCATGTTAGCAATGCAAAATGTGATTTAGGTTAGCAATGGCaaggtttattgtttttagatGCAAACAACTCAGGCCATTCTGTACAATAACACTGGATCCCTGTGGCATCGTTCTAAAAGAGATTTGTGTTTTAGGTTGTAAATGCTGACAATGTTATGACAGAAGCTGTTTCACAGTTCAGAGAATATGAAGCTGAAATCTCTCTCAGTGAGGGTCAAAGTGCTTAAAaagttctgaaaacaaatgtattggtaTAACACAATAAAGATTGGGTTCCACCCCTTTTAAAAGCAGATGTCAGGAAACGATTGCCCCAGGAGGTCTTCACCAATGTTTGTGATCTCAAGGTATCTGTTTGGATGAGATGCAGAAAATCTACAACCTGCCtgggcatttttttaaatacatttactctTCC

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055014 atrial cardiac muscle cell development biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes

RNA

RNA id representative length rna type GC content exon number start site end site
TU163619 True 1034 lncRNA 0.34 2 24052822 24120461

Neighbor

gene id symbol gene type direction distance location
AMCG00001298 NA coding upstream 62740 23948449 ~ 23990082 (+)
AMCG00001300 NA coding upstream 139013 23903328 ~ 23913809 (+)
AMCG00001294 ino80d,LOC106582458 coding upstream 293753 23721823 ~ 23759069 (+)
AMCG00001285 NA coding upstream 932867 23100907 ~ 23119955 (+)
AMCG00001284 NA coding upstream 1019323 23031304 ~ 23033499 (+)
AMCG00001299 dnpep,LOC106573845 coding downstream 59789 24180250 ~ 24207621 (+)
AMCG00001309 NA coding downstream 136375 24256836 ~ 24286635 (+)
AMCG00001302 ptprn,ptprnb,LOC107748541 coding downstream 202210 24322671 ~ 24351647 (+)
AMCG00001313 si:ch211-114n24.6,LOC106598125,LOC107581392,LOC107659949,LOC108433351,LOC103467923,LOC102313992,LOC104949664,LOC106573846 coding downstream 327160 24447621 ~ 24455129 (+)
AMCG00001311 tuba8l2,LOC108411703,LOC103042625,LOC107750365 coding downstream 360508 24480969 ~ 24490636 (+)
G130530 NA non-coding upstream 126811 23924878 ~ 23926011 (+)
G130531 NA non-coding upstream 128945 23923211 ~ 23923877 (+)
G130492 NA non-coding upstream 196706 23855720 ~ 23856116 (+)
G130461 NA non-coding upstream 323593 23729005 ~ 23729229 (+)
G130365 LOC107575789,LOC100846954 non-coding upstream 771488 23280811 ~ 23281334 (+)
G130648 NA non-coding downstream 630658 24751119 ~ 24751414 (+)
G130684 NA non-coding downstream 902218 25022679 ~ 25023049 (+)
G130689 NA non-coding downstream 936160 25056621 ~ 25056978 (+)
G130692 NA non-coding downstream 966200 25086661 ~ 25086898 (+)
G130695 NA non-coding downstream 1003133 25123594 ~ 25126079 (+)
AMCG00001292 ndufs1,LOC107555450,LOC107748553 other upstream 367701 23565151 ~ 23685121 (+)
G130335 NA other upstream 886166 23166263 ~ 23166656 (+)
AMCG00001278 ercc3,LOC107706662 other upstream 1521986 22500035 ~ 22530836 (+)
AMCG00001269 trak2,LOC107582328,LOC106573853 other upstream 1814168 22189908 ~ 22238654 (+)
AMCG00001260 NA other upstream 2060490 21971299 ~ 21992332 (+)
AMCG00001312 tuba4a,tuba8l4,tba1a,si:ch211-114n24.6,LOC108251627,LOC107714908 other downstream 304104 24424565 ~ 24446233 (+)
G130616 si:ch211-114n24.6,LOC107581306,LOC108436424,LOC101061790,LOC103034569 other downstream 313332 24433793 ~ 24454385 (+)
AMCG00001315 NA other downstream 463718 24584179 ~ 24606472 (+)
AMCG00001331 NA other downstream 1303226 25423687 ~ 25450310 (+)
AMCG00001337 sumo1 other downstream 1615094 25735555 ~ 25749501 (+)

Expression


Co-expression Network