G130616 (si:ch211-114n24.6,LOC107581306,LOC108436424,LOC101061790,LOC103034569)


Basic Information

Item Value
gene id G130616
gene name si:ch211-114n24.6,LOC107581306,LOC108436424,LOC101061790,LOC103034569
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 24433793 ~ 24454385 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU163702
CACAAACTTTTTCCCAtcacttgtttatttcttaCAAAATATTGACCTGACTTTTACTGCATTTAATGGCAGAAGCAAATTATTGGTGGTGTTTGAAAGGAATGTGTGCTAAGATACAGTGGAATCACTTCCATGGAATATTGTTAGTACATTCACAACTACACAGAGTCCATGAAGAGTATATTGATTCTTGTGGTTTTTATATTGGAATGCAGTTGAGTAGAAGCCAGGATCATTATCTTCTTCCTAATACTCCTCCCCCTCTTCATCTTCCTCTCCCACGCTGTCAGTGCCCACCTCTTCATAATCCTTCTCCAGGGCCGCCATGTCCTCTCTGGCCTCAGAGAACTCGCCCTCCTCCATGCCCTCTCCCACGTACCAGTGGACGAAGGCGCGCTTGGCGTACATCAGGTCAAACTTGTGGTCCAGGCGGGCCCAGGCCTCAGCGATAGCAGTGGTGTTGCTCAGCATGCACACGGCCCTCTGCACCTTGGCCAGGTCACCCCCGGGCACCACGGTGGGGGGCTGGTAGTTGATGCCCACCTTGAAGCCAGTGGGACACCAGTCAACAAACTGGATGGTGCGCTTGGTCTTGATGGTGGCGATGGCAGAGTTGACATCCTTGGGCACCACGTCTCCACGGTACAGCAGACAGCAGGCCATGTACTTGCCGTGACGGGGGTCACACTTCACCATCTGGTTGGCTGGCTCAAAGCAGGCATTGGTGATCTCAGCCACAGACAGCTGCTCATGATAGGCCTTCTCGGCAGAGATCACTGGGGCGTAGGTGGCCAGGGGGAAATGGATACGGGGGTAGGGCACCAAGTTGGTCTGGAACTCCGTCAGGTCCACATTCAGGGCACCATCGAAGCGCAGGGAGGCGGTGATGGAGGAGACAATCTGGCCAATGAGCCGGTTCAGGTTGGTGTAGGTGGGACGCTCAATGTCCAGGTTTCTGCGGCAGATGTCATAGATGGCCTCATTGTCGACCATGAAGGCGCAGTCGGAATGCTCCAGGGTGGTGTGGGTTGTCAGGATGGAGTTGTAGGGCTCAACCACAGCTGTGGACACCTGGGGAGCTGGGTAGACTGCAAACTCCAACTTGGACTTCTTGCCATAGTCAACAGAGAGACGCTCCATCAGCAGAGAGGTGAAACCAGAGCCGGTACCACCACCAAAGCTGTGGAAGATGAGGAAGCCTTGGAGCCCAGTGCACTGGTCAGCC

Function

symbol description
si:ch211-114n24.6 Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule.

NR:

description
PREDICTED: tubulin alpha chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU163702 True 1225 TUCP 0.54 3 24433793 24454385

Neighbor

gene id symbol gene type direction distance location
AMCG00001302 ptprn,ptprnb,LOC107748541 coding upstream 82146 24322671 ~ 24351647 (+)
AMCG00001309 NA coding upstream 147158 24256836 ~ 24286635 (+)
AMCG00001299 dnpep,LOC106573845 coding upstream 226172 24180250 ~ 24207621 (+)
AMCG00001297 tmem198a coding upstream 342944 24072429 ~ 24090849 (+)
AMCG00001298 NA coding upstream 443711 23948449 ~ 23990082 (+)
AMCG00001311 tuba8l2,LOC108411703,LOC103042625,LOC107750365 coding downstream 26584 24480969 ~ 24490636 (+)
AMCG00001310 stk16,LOC107676064,LOC107674016,LOC107750071,LOC107750290 coding downstream 42273 24496658 ~ 24502375 (+)
AMCG00001314 NA coding downstream 113980 24568365 ~ 24576371 (+)
AMCG00001317 NA coding downstream 191467 24645852 ~ 24659929 (+)
AMCG00001319 NA coding downstream 248258 24702643 ~ 24861705 (+)
G130552 NA non-coding upstream 313332 24052822 ~ 24120461 (+)
G130530 NA non-coding upstream 507782 23924878 ~ 23926011 (+)
G130531 NA non-coding upstream 509916 23923211 ~ 23923877 (+)
G130492 NA non-coding upstream 577677 23855720 ~ 23856116 (+)
G130461 NA non-coding upstream 704564 23729005 ~ 23729229 (+)
G130648 NA non-coding downstream 296734 24751119 ~ 24751414 (+)
G130684 NA non-coding downstream 568294 25022679 ~ 25023049 (+)
G130689 NA non-coding downstream 602236 25056621 ~ 25056978 (+)
G130692 NA non-coding downstream 632276 25086661 ~ 25086898 (+)
G130695 NA non-coding downstream 669209 25123594 ~ 25126079 (+)
AMCG00001292 ndufs1,LOC107555450,LOC107748553 other upstream 748672 23565151 ~ 23685121 (+)
G130335 NA other upstream 1267137 23166263 ~ 23166656 (+)
AMCG00001278 ercc3,LOC107706662 other upstream 1902957 22500035 ~ 22530836 (+)
AMCG00001269 trak2,LOC107582328,LOC106573853 other upstream 2195139 22189908 ~ 22238654 (+)
AMCG00001260 NA other upstream 2441461 21971299 ~ 21992332 (+)
AMCG00001315 NA other downstream 129794 24584179 ~ 24606472 (+)
AMCG00001331 NA other downstream 969302 25423687 ~ 25450310 (+)
AMCG00001337 sumo1 other downstream 1281170 25735555 ~ 25749501 (+)
AMCG00001361 NA other downstream 2402214 26856599 ~ 26880797 (+)
AMCG00001365 NA other downstream 2449978 26904363 ~ 26954597 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_02567315_02569427 TUBA1C, TUBA1B, TUBA1A, TUBA1A.S, TUBA1D coding CI01000001 null 2566675 ~ 2569605 (+)