G130695


Basic Information

Item Value
gene id G130695
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 25123594 ~ 25126079 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU163798
tcaaTGGTCTGCAAATTAATCATGATACAACAACATTTGCAGTATATGCTATTGCACAATGGGCCTTTCAGCAAACCAGTTTCAAACTGTTCATCTCAGCCATGTCACCGTGCATCTGAGCCACCGAGAAACAACAGATCCCAGAATTCTAGGATAATAGGAAAATCCTACCTTATTTCCATACTATGTTGATTGATGAACAATGACACCTGAGCCTTTAACACAGCAATGTATATagatctctctttctcttgtgAGAGAGatctatagagagagagagagagagagagagagagagatacacagacTAGTCTCTCTCTCATGTGGACTCTATAATGTTTCCTCAGTTCATGTAATGAAATTCTTCCCACACCGAGCACAGCTGTAGTCTCTCCCCTGTGtggattttcaaatgtaaattacacTTTGATGAATCAGAGAAACCCTTTTCCACAGTGACTACAGTTacatggtctctctcctgtgtgaatttCACATTTCTTCAGTTCTCCTGATGTACTGAAACCCTTCCCACTCTGATCACAATGGAGGTCTTTCTCCAGAGTGAATTTTCTGGTGTGCCTTGTAAGTATGCAAGTAACCGAAACTCCTCCCACACTGACTACAGCtgtatggtctctctcctgtatgaACTCGATAATGTTTCTTCAGATCTCCTGATGCCATGAAACCTTTCCCACACTGACTACAGCtgtatggtctctctcctgtgtgaaatCGATAATGTGTCTTCAGTTCTCCTGATGCCATGAAATCCTTCCCACACTGATTACAGGtgaatggtctctctcctgtgtgaactCGAAAATGTCGTCTCAGTTCTGCTGATACAATGAAACCCTTCCCACACTGATTACATCTATAGGGTCGCTCTCCTGTGTGAATTTTCTGGTGTAACTTAAGACTACATATACgactgaaactcttcccacactgactACATTTGCACATCCCCTGTCCTGTGTGAACTTGGTAATGTTTCTTTAGATGTCCTGATGTACTGAAACCCTTGCCACACTGATCACAGATGTgaggtttctctcctgtgtgaactCGATAATGTCGCTTCAGGTGTCCTGACAAcatgaaactcttcccacactgatcACAGCTGTAGGgcctctctcctgtgtgaactCTACAATGTTTCCTCAGTTCTCCTAAAGTAATGAAACACTTCCCACACTGATCACAGCTGTAAggtctctctcctgtatgaATTTTCTGGTGTAACTTAAGATGTCCTGATTGAGAGAAATTCTTCCCACACTGAGCACAGCGGTACGGTCTCTCCCCTGTGTGCATTCGCAAGTGTGAATTAAGCTTTGATGAACTACAGAAGCCCTTTCCACAGTGACTACAGTTATATGggctctctcctgtgtgaatttGCATGTGTATTCGAAGGTAGGATGATCTcatgaaactcttcccacactgatcACAGCTGTGAGGTCTATTTACCATGTGACTTTGgtaatgtattttcagttcTTCTGATGTAATGAAAAGCTTCTTGCACTGATCACAGCTGTGATGTTGATTTCCTGTGTGAATGTTCTGGTGTGACTTCAAGCTACCTGATTTGCAGAATTCTGTTTCACATTGTTCACAGCAGTACAGTCTTTCTCCCATGTGGTGGCACTGGTGTATTTTAAGATGTGAGGTTATTCTGAAGCTTGTTCCACACTGTGCACAGTAATTACAGTTCTCATGGTCTCCAGTGAACTCTGCTGTGTCTTTGTTCACTGCCAGTGATCTGTAAGTACTGAAGCTTTTACTTCTTTGTGGCAATAACAGTCTCTCCAATCTCACTGAGCAAGGCCTCATTTCCTCCTGAGGAGGAATCCTTTGTTCTGGCTGTTGTCCTCTGCTTCTATTGTCCTCTCTGTATTGATCCAGCTGGGAGGTATCTAGCTCAGTCTCTGTGTTCTCATGTTTAACAGACTGGAGCTCAGTCTCTGTTTTATAAGTGATACAATCCAAAATGGTATCTTGGAGTAGGTCAATGTGCGGTTCCGAAACATTCAATGTATCAGTTTCACTCAGTTGCACTTCTGTGTACTCCAGTTTAACCACAGAtttaatgtcaatattttcAGTAGTGTTCACTGGATCCGGATGATTGAGCCCCTCTCTTCTGTGCTCAGACTGTGCTGGATTGTGCCTCTGAGGTCCTGCCTCTGCCATATAGACAGGGTGCAAACTACTGAGCTTCTCCTCCATCTGTTCATTCCTGTGATGGTCAACAATCTCCCCTTCGTCTTCAATGGCTGTGGGTTCTAAATCCCGTCTCAGACTAAGATCCTACTCTTCCATGCCATGTTGATTCTCAATGGCATTTGTTTTCTCACTTTCTCAGAGAGCACTGGCCTTTACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU163798 True 2402 lncRNA 0.43 2 25123594 25126079

Neighbor

gene id symbol gene type direction distance location
AMCG00001322 NA coding upstream 78782 25029903 ~ 25044812 (+)
AMCG00001319 NA coding upstream 261889 24702643 ~ 24861705 (+)
AMCG00001317 NA coding upstream 463665 24645852 ~ 24659929 (+)
AMCG00001314 NA coding upstream 547223 24568365 ~ 24576371 (+)
AMCG00001310 stk16,LOC107676064,LOC107674016,LOC107750071,LOC107750290 coding upstream 621219 24496658 ~ 24502375 (+)
AMCG00001329 NA coding downstream 24218 25150297 ~ 25150756 (+)
AMCG00001330 NA coding downstream 24685 25150764 ~ 25164833 (+)
AMCG00001325 NA coding downstream 120297 25246376 ~ 25296858 (+)
AMCG00001328 NA coding downstream 173017 25299096 ~ 25302688 (+)
AMCG00001332 NA coding downstream 237814 25363893 ~ 25365296 (+)
G130692 NA non-coding upstream 36696 25086661 ~ 25086898 (+)
G130689 NA non-coding upstream 66616 25056621 ~ 25056978 (+)
G130684 NA non-coding upstream 100545 25022679 ~ 25023049 (+)
G130648 NA non-coding upstream 372180 24751119 ~ 24751414 (+)
G130552 NA non-coding upstream 1003133 24052822 ~ 24120461 (+)
G130705 NA non-coding downstream 70303 25196382 ~ 25196991 (+)
G130711 NA non-coding downstream 89146 25215225 ~ 25215735 (+)
G130712 NA non-coding downstream 89859 25215938 ~ 25217050 (+)
G130715 NA non-coding downstream 95537 25221616 ~ 25246154 (+)
G130757 NA non-coding downstream 256100 25382179 ~ 25397634 (+)
AMCG00001315 NA other upstream 517122 24584179 ~ 24606472 (+)
G130616 si:ch211-114n24.6,LOC107581306,LOC108436424,LOC101061790,LOC103034569 other upstream 669209 24433793 ~ 24454385 (+)
AMCG00001312 tuba4a,tuba8l4,tba1a,si:ch211-114n24.6,LOC108251627,LOC107714908 other upstream 677361 24424565 ~ 24446233 (+)
AMCG00001292 ndufs1,LOC107555450,LOC107748553 other upstream 1438473 23565151 ~ 23685121 (+)
G130335 NA other upstream 1956938 23166263 ~ 23166656 (+)
AMCG00001331 NA other downstream 297608 25423687 ~ 25450310 (+)
AMCG00001337 sumo1 other downstream 609476 25735555 ~ 25749501 (+)
AMCG00001361 NA other downstream 1730520 26856599 ~ 26880797 (+)
AMCG00001365 NA other downstream 1778284 26904363 ~ 26954597 (+)

Expression


Co-expression Network