G130773


Basic Information

Item Value
gene id G130773
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 25450516 ~ 25450858 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU163896
GGGACATTGCAGGAATTCAGTTGagatttacattacatattaacatattttaactttaatattaTAACACCAACAGAATAACTTTCAGATGTAATTATGCCTAAAATGGTATGCTAATTTAGCTCTGGCATTCTTCGCTGAGGTTCACTTTCTCATTAAGACACAAGTAGTGCATGAACAGGCTATTTGTAATTGCTGTGCGCCTCTGGCTTGGTTAGACGTGAACGGGGAATTGGGAATGCAGTCTGTATGCTATAGACTGAATGGTAGAGCATTTAGGTTGAAGACCTTTTCCTGTGAGCTTCACCTGTTCACAAAAGCATAAAATTAAACCACGTCCTGA

Function

GO:

id name namespace
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU163896 True 343 lncRNA 0.38 1 25450516 25450858

Neighbor

gene id symbol gene type direction distance location
AMCG00001332 NA coding upstream 85220 25363893 ~ 25365296 (+)
AMCG00001328 NA coding upstream 147828 25299096 ~ 25302688 (+)
AMCG00001325 NA coding upstream 153658 25246376 ~ 25296858 (+)
AMCG00001330 NA coding upstream 285683 25150764 ~ 25164833 (+)
AMCG00001329 NA coding upstream 299760 25150297 ~ 25150756 (+)
AMCG00001334 NA coding downstream 101586 25552444 ~ 25581376 (+)
AMCG00001335 NA coding downstream 179189 25630047 ~ 25636339 (+)
AMCG00001333 NA coding downstream 213007 25663865 ~ 25673767 (+)
AMCG00001338 NA coding downstream 268046 25718904 ~ 25725679 (+)
AMCG00001348 als2,LOC106574246 coding downstream 571123 26021981 ~ 26069510 (+)
G130757 NA non-coding upstream 52882 25382179 ~ 25397634 (+)
G130715 NA non-coding upstream 204362 25221616 ~ 25246154 (+)
G130712 NA non-coding upstream 233466 25215938 ~ 25217050 (+)
G130711 NA non-coding upstream 234781 25215225 ~ 25215735 (+)
G130705 NA non-coding upstream 253525 25196382 ~ 25196991 (+)
G130789 NA non-coding downstream 131484 25582342 ~ 25582606 (+)
G130792 NA non-coding downstream 182376 25633234 ~ 25633576 (+)
G130817 NA non-coding downstream 224359 25675217 ~ 25675482 (+)
G130839 nol5,nop58,LOC106575044,LOC106594422 non-coding downstream 276995 25727853 ~ 25729837 (+)
G130884 NA non-coding downstream 610290 26061148 ~ 26062693 (+)
AMCG00001331 NA other upstream 206 25423687 ~ 25450310 (+)
AMCG00001315 NA other upstream 844044 24584179 ~ 24606472 (+)
G130616 si:ch211-114n24.6,LOC107581306,LOC108436424,LOC101061790,LOC103034569 other upstream 996131 24433793 ~ 24454385 (+)
AMCG00001312 tuba4a,tuba8l4,tba1a,si:ch211-114n24.6,LOC108251627,LOC107714908 other upstream 1004283 24424565 ~ 24446233 (+)
AMCG00001292 ndufs1,LOC107555450,LOC107748553 other upstream 1765395 23565151 ~ 23685121 (+)
AMCG00001337 sumo1 other downstream 284697 25735555 ~ 25749501 (+)
AMCG00001361 NA other downstream 1405741 26856599 ~ 26880797 (+)
AMCG00001365 NA other downstream 1453505 26904363 ~ 26954597 (+)

Expression


Co-expression Network