G130817


Basic Information

Item Value
gene id G130817
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 25675217 ~ 25675482 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU163941
GGAGTCATGGTCGTCTCTTCTGCAAAGCACAAAGATTTTCAGTTTAGATGTGAGGACGAAATGAGTATTACAGATATgaaatattattacaaacacTATGATGCTGCAAGCAGGATTTACCTGCTCCTGGTAGCATTAACCTCGATTTCCTTTGActtcaaaatgttgatttatattgtgtaaCATACTTGTACTGTTGTAGTCCTCTTCATACCTGAACAACCACAGAGAATCAGTGCAGACATGGGTTTAATAATTCAGTAGAC

Function

GO:

id name namespace
GO:0015629 actin cytoskeleton cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU163941 True 266 lncRNA 0.37 1 25675217 25675482

Neighbor

gene id symbol gene type direction distance location
AMCG00001333 NA coding upstream 1450 25663865 ~ 25673767 (+)
AMCG00001335 NA coding upstream 38878 25630047 ~ 25636339 (+)
AMCG00001334 NA coding upstream 93841 25552444 ~ 25581376 (+)
AMCG00001332 NA coding upstream 309921 25363893 ~ 25365296 (+)
AMCG00001328 NA coding upstream 372529 25299096 ~ 25302688 (+)
AMCG00001338 NA coding downstream 43422 25718904 ~ 25725679 (+)
AMCG00001348 als2,LOC106574246 coding downstream 346499 26021981 ~ 26069510 (+)
AMCG00001350 NA coding downstream 400088 26075570 ~ 26097013 (+)
AMCG00001349 NA coding downstream 424796 26100278 ~ 26117478 (+)
AMCG00001351 NA coding downstream 447361 26122843 ~ 26140826 (+)
G130792 NA non-coding upstream 41641 25633234 ~ 25633576 (+)
G130789 NA non-coding upstream 92611 25582342 ~ 25582606 (+)
G130773 NA non-coding upstream 224359 25450516 ~ 25450858 (+)
G130757 NA non-coding upstream 277583 25382179 ~ 25397634 (+)
G130715 NA non-coding upstream 429063 25221616 ~ 25246154 (+)
G130839 nol5,nop58,LOC106575044,LOC106594422 non-coding downstream 52371 25727853 ~ 25729837 (+)
G130884 NA non-coding downstream 385666 26061148 ~ 26062693 (+)
G130948 NA non-coding downstream 621225 26296707 ~ 26335290 (+)
G131017 NA non-coding downstream 1095398 26770880 ~ 26771161 (+)
G131021 NA non-coding downstream 1117789 26793271 ~ 26793553 (+)
AMCG00001331 NA other upstream 224907 25423687 ~ 25450310 (+)
AMCG00001315 NA other upstream 1068745 24584179 ~ 24606472 (+)
G130616 si:ch211-114n24.6,LOC107581306,LOC108436424,LOC101061790,LOC103034569 other upstream 1220832 24433793 ~ 24454385 (+)
AMCG00001312 tuba4a,tuba8l4,tba1a,si:ch211-114n24.6,LOC108251627,LOC107714908 other upstream 1228984 24424565 ~ 24446233 (+)
AMCG00001292 ndufs1,LOC107555450,LOC107748553 other upstream 1990096 23565151 ~ 23685121 (+)
AMCG00001337 sumo1 other downstream 60073 25735555 ~ 25749501 (+)
AMCG00001361 NA other downstream 1181117 26856599 ~ 26880797 (+)
AMCG00001365 NA other downstream 1228881 26904363 ~ 26954597 (+)

Expression


Co-expression Network