G130948


Basic Information

Item Value
gene id G130948
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 26296707 ~ 26335290 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU164097
CGGAAGGCTCAACAGTGATTGAAAGGAAAGATGACTGCAGGCCGCTTTCTTTGTAGCTGCAGCTTGTGATTTCCAGACTCGCTTCGCCGTCTCATACTATTTCTGCACCGATATGCTTGGGAAAATCGGTAAAGTATGTCTGACCTAAATGTATGTACTTTGCATTAACTAAAAGGCTAGAGATGTTAATTCCACCAGTCAGAAATCAATTCCCTCTGTTTTATATAACCGTACCCCTTTGAAGAAAGAGTCAAGAATGGACAGTTCATGCTGTTGGAGCTATTAAGCACTCAAGAGGTTTCATTCATGAAGACTTTTCAACCTCTAAATAATtagaagaatacaaaaagaatggtctaaaaaaaagagagaaggttCATGTGTTTTTTACCCCATCAACAAAACGGACGTGTTAAATATTTAAGATAGGAGTGAGTAGCATTACActtattgcatttttcttcttcattgtttaatgtaatatgtGCTTCCATGATTAAGGTTTAGCAGTACACAATGTttgcacacactgtacaacagatccccccctcccaccccctctcGTCCTGTCACCTCATCCGCTGCGACGGTGACGGCCGCTGTCCATAGCGCTCAGGGTTTTCTGCACAGCGCCTAATGTGAGCACCAGGAAGCATAAACGAACGTGACAGGCATCCTGAAATGTAGGTCGTGAGGCCCGATGTGTGCTTTTAAGATCGATTTCCACGTGGCAAGCTGCAGGAAGATTAATATTATCTAAAAACTATAGAGCTCTgtaagattgttttgtttttctttaaaaggagACAAATGATTGCATTGATactcaaaaaattaaaaaacaggcaTTGCAAAGAAAGAACACTTCTAGAAGACCACGTACAATTTCAACAGTTATATTGTGATGTTTTAGCGTAAATGCAAGAGAcatgattttattcatttataattcttttttttttttttttctgtcttcccccatttcattatatattgGAGACATTCCTGACATTACAGAGCTCATTTGGCCAGCTTCGCTCGGACTCGACAGTTCAACGCAGGGATATTTCAATGCATCAGAGATATTGAACAATCAGGAGCTgcgcaaaataaatattgacctGTCCtcctccaaaaaataaaaaatgaaatatgatcTATTGGTCACTATCTAGTCTAGAGGGTATTTTTTTATACTCAAATCTTATATTTGAATGCCTTAGTAGTGTAAGTAACTGATAGGCCTATATATCCAGTTTTGAGCATGATCCTCCTTGGCAAATGacttttacacaaaatataccaAATCTAAAGAGTATTTAGCCGACAATGTCAACAGATGCACCAGATCACCTACAAATCTAGACTTTATATACAAAACCAAGAGTACTTCAACGAAATTGAATTCATGTCCCAATAGGTCAGGAAATGCTATTAATACACTTATTCCATTCAACCCGAGTAAAACTAAACAACTGCGGCTGTTTGGTCAGTTTAAATCCGAAAAGGATAGTTCCTTGGTCAATGAAAGGACGTTTCTCCTCCCCTCTTCTCTTAATCCTTTCTATTCAAATATTCAGAATATAAAGAGAAGTTTGAGCAGAAGCACAAGGCAATCAaatcttactctctctctcggtctctgcTTAACCATACATGTTACCTTtcaaagcacaaaaacaaaccagcacCTCAACAACCCAAAATCAAGGTCTTTCCAATTGGGTACAACGCATCAGACAAGATAATTCTATTGCTGTGCCCGATTTGTTCCCAGATTCTAGACTGAAATCTAGAGCAGATCGTATTATTCTTAGCatgacttgtattttattttttatttttgagagGACATTGTAGCACCCTTCAGTGTAGACAAGGCATATCGTGTGGTCCGTTTACCCTGAGCCTCGCTGGCATCACAACAGATTAAAGGATTAGACCCGGTGCAGTTGCATGCAGAGGTGTTGGCAGTATAGGTGCTTTAAGACACATAACCCCCTGCCCTTCATTTTCCCCCATAACAGTGAACCGATCCCCCAGTGTAGGTGGCAATCCACTGAGGGACAGCAAGGCCAAAGTGAGCAATTAAAGACAAGAATAGCTATGTACAGACAAACGGCAAAGTGACATTCGGAAGCAGTGACAGCAGTTCTATCCAATCACAGATCCAGTTTGCAGAGGTGGGAGTTAGTGTggttgttgatttgttttttggctCCAAACAGtccttttttgattttttttccgtACAGAAACAATTTGGTCGGGTCGTTGCTCGTTCCAGTTGTACAGCGGTCACATCATTAAAGGTTCTCAACCATTTTGCATCACAGTAAACGTGTCACACACATGTGCACttatttgcaaaagaaaaatcagacGGATGGTCGGGGGGGGTGGGATTCGTACTGAAACAGACGTCCGCAGCAAGCAAACCGCTCTCATTTGATAACAAAAACCAACTCTCGTCTGCATAGCAAGCAGAGGGACAGAAAAATGCACTTCATTCCAGATCATAAAACCAGTCTTGTAGCACTTGATCTCCCTGCTGATTcttaaatacaaacatcttCCAGAAGACCATATTTtttgtacatacattttgtgaTCAATATGGGCAAAACCTTCCCCTCCccgtttttaaaactaaattctaacaaaaaaatactttaaaatttccgtattaaataattaaaaaaagaaaaaaacgtttAAAACTATTGCCCCACTCCTTCCACCCTTTCCCGAAGCTTCTCTTGTTTACATTGTGTCCATAAAGTAGTCCATGCAGTACCATTATATATAGAGACAAAAAGTCATACttgttgtaattttttttttgtattttttttttgtgttattttcatttttttttttgtttttttttttttttaaagagataaCAGAGAGATTACGTGCTGAATTTAcaatgccaaaaaaaacattcccacaCAAATATTGCAGTCCAAAAACTGTCCTTTTGCATCTCAGATGCTCTAATGTCAGATTACATCAGAGCAGTATGCACTTTATGTCCCAAGCAGGTTCCCTTCTCCTGTGGCACTGTGGGTAACTGCGGAAAGCAGAAACGGGTGATGTTCGCCAGTACAAATCTGCTGTTCGAAAACTGGACGTGAACGGTACTCACCCATTTGCAGCTCAGAAATGGTCTCCACCAGCGACCAGTCTGGGCTGTATCCGCAGTGGGACTTATCCAGGAGGCTGTCCAGGACCTGTCGGACCGTTTGCCTCTCATCCACCATCATGGTTTTGGAGCTCTCGTCAGACATGTGCACCCGAATTACCAGCTGCAGTGGAaatggggaggggagggggggagaaagCAGTGGATTAAGCTTtccacagattaaaaataagaacacaGCCAACTGACATAGGAAAAACAGGGgctgaaatagaaaaaatggattataataaaatatatggtGACGTTACATCAACTGTTTAAATAACATGCCTGtcatttttctgttctgtttttcttttaatatgtgGTATAAATGCCAAAGCTGCTACTTTCACAATATCAGTTTGTCTTTGTGGAGGGCAGGTGTCTGATGCTGAGCAAGAAACACCTTTACTGTCACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU164097 True 3613 lncRNA 0.40 2 26296707 26335290

Neighbor

gene id symbol gene type direction distance location
AMCG00001353 NA coding upstream 5859 26284460 ~ 26290848 (+)
AMCG00001347 LOC103029249,LOC108423993 coding upstream 27710 26231286 ~ 26268997 (+)
AMCG00001352 NA coding upstream 106837 26187889 ~ 26189870 (+)
AMCG00001351 NA coding upstream 155881 26122843 ~ 26140826 (+)
AMCG00001349 NA coding upstream 179229 26100278 ~ 26117478 (+)
AMCG00001355 NA coding downstream 109791 26445081 ~ 26453330 (+)
AMCG00001356 NA coding downstream 146101 26481391 ~ 26488991 (+)
AMCG00001357 NA coding downstream 176267 26511557 ~ 26519285 (+)
AMCG00001360 NA coding downstream 202662 26537952 ~ 26545509 (+)
AMCG00001363 NA coding downstream 501197 26836487 ~ 26838265 (+)
G130884 NA non-coding upstream 234014 26061148 ~ 26062693 (+)
G130839 nol5,nop58,LOC106575044,LOC106594422 non-coding upstream 566870 25727853 ~ 25729837 (+)
G130817 NA non-coding upstream 621225 25675217 ~ 25675482 (+)
G130792 NA non-coding upstream 663131 25633234 ~ 25633576 (+)
G130789 NA non-coding upstream 714101 25582342 ~ 25582606 (+)
G131017 NA non-coding downstream 435590 26770880 ~ 26771161 (+)
G131021 NA non-coding downstream 457981 26793271 ~ 26793553 (+)
G131072 NA non-coding downstream 643485 26978775 ~ 26980289 (+)
AMCG00001337 sumo1 other upstream 547206 25735555 ~ 25749501 (+)
AMCG00001331 NA other upstream 846397 25423687 ~ 25450310 (+)
AMCG00001315 NA other upstream 1690235 24584179 ~ 24606472 (+)
G130616 si:ch211-114n24.6,LOC107581306,LOC108436424,LOC101061790,LOC103034569 other upstream 1842322 24433793 ~ 24454385 (+)
AMCG00001312 tuba4a,tuba8l4,tba1a,si:ch211-114n24.6,LOC108251627,LOC107714908 other upstream 1850474 24424565 ~ 24446233 (+)
AMCG00001361 NA other downstream 521309 26856599 ~ 26880797 (+)
AMCG00001365 NA other downstream 569073 26904363 ~ 26954597 (+)

Expression


Co-expression Network