AMCG00002336 (fbxo42,LOC107573139,LOC106565130)


Basic Information

Item Value
gene id AMCG00002336
gene name fbxo42,LOC107573139,LOC106565130
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11720216 ~ 11725951 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002336
CAGCTGCCATGGCTGCCTCATCTGACAGTGAAGATGACAGTTTTGTTGCCATGGACACAGAGGAGGGGACGGCAGTTGGCATGGtgatgggggcgggggggggcagCATGGAGCAGGACGAGGAGCCGGCGCACGGGGTGGAGGCCGAGACGGAAGCAGAGGGAGTGGCCGAGGGAGACGGCGAGACAGAGGGGGAAcagggcacagagagagacaggggtaGACCGCACCCCCACGTGGTGGAGAGGGCCATGGGCGAGCTGCCGGAGGAGGTGCTGGAGTATATCCTGTCCTTCCTGTCACCCTACCAGGAGCACAAGACCGCCGCCCTTGTCTGCAAGCAGTGGTACCGCCTCATCAAGGgtgTGGCTCATCAGTGTTACCATGGTTTCCTGAGGGCGGTGCAGGAGGGCAATATCCAGTGGGAGAGCCGGACGTACCCCTACCCCGGCACCCCCATCACACAGCGCTTCTCCCACAgtgCGTGTTACTATGACAGTAACCAGTCCATGTATGTGTTCGGGGGCTGCACTCAGAGCAGCTGTAACGCTGCTTTCAATGACCTCTGGAGACTCGACCTCAACAGCAAGGAGTGGATCCGCCCACTGGCCTCAGGCTCATACCCCTCCCCGAAGGCGGGCGCGACCCTGGTGGTGTACAGGGACCTGCTGGTGCTGTTTGGGGGCTGGACTCGACCCAGCCCGTACCCCCTGCACCAGCCTGAGCGGTTCTTCGACGAGATCCATACCTACTCCCCCTCCAAGAACTGGTGGAACTGTATTGTTACGACGCATGGTCCCCCCCCAATGGCAGGACACTCTTCCTCTGTGATTGGCGGCAGGATGGTCGTGTTCGGGGGGTCACTGGGGTCACGGCAGATgaGTAATGAGGTCTGGGTTCTGGACCTGGAGCAGTGGTCGTGGTCCAAGCCACCCATTGCTGGCCCCTCCCCCCATCCCCGTGGAGGCCAGTCTCAGGATGCATGGCTGCTGCACATGGGCCCCCCCCCCTGGACGTGGCAGCAGTTACGTGTGGAGAACGAGGAGCACGGCGCCCCGGAGCTGTGGTGTCACCCCGCCTGCCGGGTACAAGCCGCACCTTGCCTCTCCCAATCTCTCCCTgcccctttccctctctctttctctccctcagtcTTGCTCACTCACaccctgaccccccccccccttctcactctttatgttttt

Function

symbol description
fbxo42 Orthologous to human FBXO42 (F-box protein 42).

NR:

description
PREDICTED: F-box only protein 42

GO: NA

KEGG:

id description
K10317 FBXO42; F-box protein 42

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002336 True 1205 mRNA 0.62 7 11720216 11725951

Neighbor

gene id symbol gene type direction distance location
AMCG00002335 NA coding downstream 8905 11708258 ~ 11711311 (-)
AMCG00002334 NA coding downstream 14521 11703336 ~ 11705695 (-)
AMCG00002333 NA coding downstream 19539 11694337 ~ 11700677 (-)
AMCG00002326 NA coding downstream 89307 11629149 ~ 11630909 (-)
AMCG00002328 NA coding downstream 99557 11612396 ~ 11620659 (-)
AMCG00002338 NA coding upstream 41333 11767284 ~ 11772145 (-)
AMCG00002337 NA coding upstream 47645 11773596 ~ 11783638 (-)
AMCG00002348 LOC106928075,LOC100705239,LOC102211954,LOC103467007,LOC107092894,LOC101478036,LOC106947826,LOC105927147,LOC103150475 coding upstream 61551 11787502 ~ 11790736 (-)
AMCG00002346 NA coding upstream 74490 11800441 ~ 11803744 (-)
AMCG00002352 NA coding upstream 78103 11804054 ~ 11805639 (-)
G122551 NA non-coding downstream 1247 11718530 ~ 11718969 (-)
G122548 NA non-coding downstream 4071 11714409 ~ 11716145 (-)
G122530 NA non-coding downstream 91781 11601972 ~ 11628435 (-)
G122438 NA non-coding downstream 270425 11449566 ~ 11449791 (-)
G122432 NA non-coding downstream 310630 11407524 ~ 11409586 (-)
G122632 NA non-coding upstream 118441 11844392 ~ 11845671 (-)
G122633 NA non-coding upstream 121130 11847081 ~ 11848192 (-)
G122636 NA non-coding upstream 131440 11857391 ~ 11859325 (-)
G122621 NA non-coding upstream 136952 11862903 ~ 11864056 (-)
G122726 NA non-coding upstream 317364 12043315 ~ 12045019 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other downstream 35127 11647911 ~ 11685089 (-)
AMCG00002317 plekhm2 other downstream 192298 11514000 ~ 11527918 (-)
AMCG00002301 NA other downstream 873015 10837804 ~ 10847201 (-)
AMCG00002288 NA other downstream 1440232 10269889 ~ 10279984 (-)
AMCG00002279 NA other downstream 1867141 9836918 ~ 9853075 (-)
G122597 NA other upstream 5666 11731617 ~ 11734324 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other upstream 122519 11848470 ~ 11854891 (-)
AMCG00002351 NA other upstream 143656 11869607 ~ 11872862 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other upstream 269877 11995828 ~ 12006352 (-)
G122862 NA other upstream 1302246 13028197 ~ 13029406 (-)

Expression


Co-expression Network