AMCG00002350 (tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083)


Basic Information

Item Value
gene id AMCG00002350
gene name tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11848470 ~ 11854891 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002350
ATGAATGCGCTACTGGACCGCTTTCACAATTACATCTTACCGCATCTGCGAGGGGAGGATCGCGTCTGTCACTGCAACTGTGGAAGGCACCATGTCCACTATGTGATCCCCTATGACGGAGATCAGTCTCTGGTCGACTCCTCTGAGAACTACTTTGTGAGCGACAGTGTGACGAAGCAGGAGTTGGACCTGATGCTGGGGCTGCTGCTTGGCTTCTGCTTCAGCTGGCTGCTGGTGTGGCTGGACGGGGCGCTGCACTGCGCTGTGAGGGCCTGGAGGGCCAGCCGCCGCTATGGTGAGTAG
>TU153763
agagagggagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaaccggGGCTGAGGAAGAACGGGTTTCTCCACCGGTCTCCCTGCTCGGTACCCATGCCGTCTCTGCCACCGAGCACCGGGGACACCGTGGCGCCGCTCTGTGTCATCCCTGCGCCGTGAAAACAGACATTAGACCCGGAGAGATCCCCCAGCCCAGCCGGGGGAGGGAGGCAGCAGGGGGGCGGGAACTGGGCTCTTGCTATGTGTGCTGGTTTTCTGAATGTTGTCGGAATGCAATAGAATAgttaatcatattattattaatagttgcatTAGTAGTAACACAGAGCCCGGATACTGTGGAGCGCTTTTCGCCGTGTCGCCCTTCTTCTCCGCCTTCCTGTGCTGGTTCTGTCCGGAACCAGCCGGAGCCGAACCACTGCAGCGCCCGAACCGGGGGGAGCGGAGCCCGTGACAGAGGCGGCGGGAGAGCGAGCGAGGGGAACCGGAGAGCCGGCCCTGAATGTCGCCTGGCACGGCATCCCGCGCCTGCCAGCCCGGTGCGTCTGGGAGGTTCACCGTGTAAGGGAGCGAAGTCTCCATGCCCGTCTCCCCCGGCTGGAAGGGACCACACTGTGCCACCGTCAGCGGACCCGAGGGGCAGCAGCGGGGCAgcgggagagagggacaggcgGCTGGGACGGATTGATGCCTATGGGCTGCAACACCATGATCTTTATGGTCCTCGGGGCTTCCATTGTTATGGCACCATGTCCACTATGTGATCCCCTATGACGGAGATCAGTCTCTGGTCGACTCCTCTGAGAACTACTTTGTGAGCGACAGTGTGACGAAGCAGGAGTTGGACCTGATGCTGGGGCTGCTGCTTGGCTTCTGCTTCAGCTGGCTGCTGGTGTGGCTGGACGGGGCGCTGCACTGCGCTGTGAGGGCCTGGAGGGCCAGCCGCCGCTATGactccACCTCCTGGTCATGGCTGCCCAGGTTCTGCAGGTGGCGCGAGCTGCGGGGCAGGGGGGCGGTGCGCCAGTACGATGACTCCAGTGGGAACATGGTGCACATCAAACAGAAGCTGTACCACAATGGCCACCCCAGCCCCCGCCACCTCTGAGCCCCCCCCACAAGACAACCCACCCAGACTCCCCAACTCCTTCACACacacccccctgccccctcctGCCAGCCTGCCAGCCGAGACAGCTGTGTGGAATTGTGGCGTGGCGTGGCGTGGCGTGGCATGGGGTGGGTGTGGGGTATTTTTCTGTACTGGAACACAGAGCAGGAGAGGGAAGGATGGGTCAAAG

Function

symbol description
tmem240a Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in female organism. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 21. Orthologous to human TMEM240 (transmembrane protein 240).
tmem240 Predicted to be integral component of membrane. Predicted to be active in synaptic membrane. Implicated in spinocerebellar ataxia type 21.

NR:

description
PREDICTED: transmembrane protein 240-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002350 False 303 mRNA 0.58 2 11851517 11853625
TU153763 True 1349 TUCP 0.62 4 11848470 11854891

Neighbor

gene id symbol gene type direction distance location
AMCG00002349 NA coding downstream 14647 11830472 ~ 11833823 (-)
AMCG00002347 NA coding downstream 27039 11815327 ~ 11821431 (-)
AMCG00002352 NA coding downstream 42831 11804054 ~ 11805639 (-)
AMCG00002346 NA coding downstream 44726 11800441 ~ 11803744 (-)
AMCG00002348 LOC106928075,LOC100705239,LOC102211954,LOC103467007,LOC107092894,LOC101478036,LOC106947826,LOC105927147,LOC103150475 coding downstream 57734 11787502 ~ 11790736 (-)
AMCG00002345 NA coding upstream 9723 11864614 ~ 11869352 (-)
AMCG00002357 capzb,LOC106583096,LOC106565651,LOC105897928 coding upstream 27182 11882073 ~ 11892699 (-)
AMCG00002358 NA coding upstream 51019 11905910 ~ 11913015 (-)
AMCG00002359 NA coding upstream 58219 11913110 ~ 11918100 (-)
AMCG00002367 NA coding upstream 200750 12055641 ~ 12060552 (-)
G122633 NA non-coding downstream 278 11847081 ~ 11848192 (-)
G122632 NA non-coding downstream 2799 11844392 ~ 11845671 (-)
G122551 NA non-coding downstream 129501 11718530 ~ 11718969 (-)
G122548 NA non-coding downstream 132325 11714409 ~ 11716145 (-)
G122530 NA non-coding downstream 220035 11601972 ~ 11628435 (-)
G122636 NA non-coding upstream 2500 11857391 ~ 11859325 (-)
G122621 NA non-coding upstream 8012 11862903 ~ 11864056 (-)
G122726 NA non-coding upstream 188424 12043315 ~ 12045019 (-)
G122801 NA non-coding upstream 341029 12195920 ~ 12243914 (-)
G122858 NA non-coding upstream 1145950 13000841 ~ 13005335 (-)
G122597 NA other downstream 114146 11731617 ~ 11734324 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other downstream 163381 11647911 ~ 11685089 (-)
AMCG00002317 plekhm2 other downstream 320552 11514000 ~ 11527918 (-)
AMCG00002301 NA other downstream 1001269 10837804 ~ 10847201 (-)
AMCG00002288 NA other downstream 1568486 10269889 ~ 10279984 (-)
AMCG00002351 NA other upstream 14716 11869607 ~ 11872862 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other upstream 140937 11995828 ~ 12006352 (-)
G122862 NA other upstream 1173306 13028197 ~ 13029406 (-)
AMCG00002421 sec61b,LOC102796100 other upstream 1794336 13649227 ~ 13654247 (-)
G123263 NA other upstream 3086369 14941260 ~ 14946311 (-)

Expression


Co-expression Network