AMCG00002382 (smarcc1,LOC106605342,LOC106581105)


Basic Information

Item Value
gene id AMCG00002382
gene name smarcc1,LOC106605342,LOC106581105
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 12185034 ~ 12203026 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002382
GAACAGCAGATAACAATGGCGACAACGGCGACTGCAGCGGGGGGAGCGGGCTCTGGGGGCCCGGCAACCGGGCAGACGGGCGGCGGCGCCTCGGCCCTCTCCGTGGGCAGGAAGAAAGACGGGGGGCCCTCCGCCAAGTTCTGGGAGAGCTCGGAAACCGTGACCCAACTTGAACCGATTCGGCTCTGGATCATGAAACACTACAAGAAGTATGTTCAGACTGACTCCCCTTCCAACAAGTCCCTGGCCGGGCTGGTGGTGCAGCTGCAGCAGTTCCAGGAGGATGCCTTCGGGAGGAGAGTCAACAACCCTGCACTCACCAAACTGCCAGCAAAGTGCTTCCTGGACTTCAAGCCAGGCGGTGCACTGTGCCACATCCTGGGTTCAGCTTACAAGTTCAAGAGTGAGCAGGGATGGCGCCGCTTTGACCTGCAGAACCCATCGCGGATGGACAGGAATGTGGAGATGTTCATGACTGTGGAGAAGACCCTGGTGCAGAACAACTGCCTGAACAGACCAGTTGTGTACCTGGTCCCGGACATTGAGCAGAAACCAGCCAACAAGCTCAAGGACATCATCAAGAGGCACCAGGGCTCCATCACCGAGGACAAGTCCAAGGCCACACACCACATCTACCCCGCCCTGTCCCCGCAGGAGGAAGATGAGTGGCTGCGTCCTGTGATGCGTAAAGACAAGCAGGTGTTGGTGCACTGGGGCATGTTCCCCGATAgCTACGACACCTGGGTCTCGGCCAGCGACGtggagggggaggtggaggagccGCCCAACCTGGAGAAGCCCTGGAAGGTCCATGCCAAGTGGGTCCTGGACACGGATGCGTTCAACGAGTGGATGAACGAGGAAGACTACGAAGTTGAAGAGAACAAGAAGTCTGTGAGTTTTCGCCAGCGCATCTTCACGCGCGACGAGGAGTCGTCCCGCACGCCGGACCGGAAGGACAGGAAGGCGGCCGCCAGCGGGAAGAAGCGGCGGCGCTCGCCctcgcccccccccacccccgtcgAGTCCCGCAAAAAGGGAGGCAAGAAGGGGCACCCTGGGCCGTACTGGAAGCGGCGTGGCCACcgtgaggaggaggagccggAGGAGGACCTAACCAAGGATATGGAAGACCCCACACCTGTGCCCAACATGGAGGAGGTCACTCTGCCCAAGAATGTGAACCCTAAGAAGGACAGTGAGAACACCCCAGTGAAGGGCGGGACAGTGGCTGACCTGGATGAACAGGAGGATGAGCCCATGGTGACTGGAGGCAAGgaggaagaagagCCGAGCAAAGCGGAGGTCAACCGGTTGATCGACTCCAGCGAGGACAATGTGACTGAGCAGACCCACCACATCATCATCCCCAGCTACGCCTCCTGGTTCGACTACAACTGTATCCATGAGATCGAGAGGCGCGCCCTGCCCGAGTTCTTCAACGGCAAGAACAAGTCCAAGTCTCCGGAGATaTACCTGGCGTACCGCAACTTCATGATCGACACGTACCGGCTGAACCCGCAAGAGTACCTGACCTCCACGTCCTGCCGCAGGAACCTGACCGGAGACGTCTGCGCGGTGATGAGggTCCATGCGTTTCTGGAGCAGTGGGGGCTGATTAATTACCAGGTGGATGCAGAGAGCCGCCCGCTGCCCATGGGCCCTCCACCCACCCCTCACTTCAACGTGTTGGCAGACACCCCCTCTGGACTGGTACCCCTGCACCACCGTCCCCCTCAGGTCCCAGCCTCGCAGCAGATGCTGAACTTCCCCGAGAAGGGCAAAGACAAGCCGTCTGACCTGCAGAACTTCGGCCTGCGCACAGACATCTACTCCAAGAAGAACCCCAAGaGTAAAGGAGCCAGTGCCGGCAGGGAATGGACTGAACAGGAGACCCTGCTGTTGCTGGAGgcTCTGGAGATGTACAAGGACGACTGGAACAAGGTGTCCGAGCACGTGGGCAGCCGCACGCAGGACGAGTGTATCCTGCACTTCCTGCGGCTGCCGATTGAGGACCCGTACCTGGAGAACTCTGACGCCTCTCTGGGCCCGCTGGCCTACCAGCCCGTGCCCTTCAGCCAGTCGGGGAATCCCGTCATGAGCACCGTGGCCTTCCTCGCCTCGGTGGTCGACCCCCGCGTTGCTGCAGCGGCCGCCAAGGCAGCCCTGGAGGAGTTCTCTCGGGTGCGGGAGGAGGTGCCGGCGGAGCTGGTGGAGGCCCATGTGAAGAAGGTGCAGGAGGCAGCCCGTAACACAGGGCGTCTGGACCCCGCCTACGGCCTGGAGAGCAGCGGCATTGCAGGCACTGCGCCCGACGAGCCGGAAAAGACGGACAACCACACTACACCTGCACTCTGTGCTATGCCAGTGGTTCGGTGTAAGCCGTGTGATGGCAGCAGGGGGCAGCAGTGTGACAGCAGTCGGGGTGATGAGATAGAGGAAGCAGTGATACGGGATGTTAAATGCAAGTTTGCAGaagCCCCAGAGCCAGAGAAGATGGAGACTGAGTCGGAGTCTCCGCAACCCGAGAAGGTGGAGAGCAAAGAGGAGCCCGAGAAGCCCAGCGAGGCTGCCGAAAGGCcaccggagagagagaggccaaaAACCGAGGTCGTGGATTCTGAGAGGGAGGAGGCTGAGAATGAGGGAGCTGAGGAGAGCAAGCCAGACAAGGAAAAGGAGGAGAGCCAGGATGGTGCTGACAGTGGAAAGGAGGGCGAGGGTGAGGAGAGCAGGAAGAAGCTGGAACCTGAGGTGGGCGAGGGGAACATTGCCACAGCTGCGGCCGCTGCCCTGGCCTCCGCTGCCACTAAAGCCAAGcACCTGGCCGCAGTGGAGGAGAGAAAGATCAAGTCTCTGGTGGCTCTGCTGGTGGAGACGCAGATGAAGAAGCTGGAGATCAAGCTGAGGCACTTTGAGGAGCTGGAGACGATCATGGACCGGGAGAAGGAAGCGGTTAGTGGAGTGGAGGAAAGGGGGGAGGCAGAGGGGATGGAGTCGGGGGCCTGGCGCTGCTGGGCACACAGAGGACCTTTCGCGCAGCCTTCTTTCACCCTGGCAGCTGACTGGCTGGCAGACCAGGGGAGGGACAGGCTGGCAAGCGGCCGGCGTGTTCCTCATAATGAACTTGCAAAGCAATTCTCGATCCCTAGCGGACTGCGGCCATTTTCCCCGTCTCCCCCTGTGCTGAGCCAGTGCAGGCTGCGCTGTCGAGCCAGAGTGCTGCTGACAGCACAGGCCTCCAGATGGCACCCTCTGGCACATctggagcagcagcggcagcagctgCTGACGGAGCGCCAGGCGTTCCACATGGAGCAGCTCAAGTATGCGGAAATGAAGGCGAGGCAGCAgatggagcagcagcagcagcagcagcagcagcagcaggcagctGCACAGGCCCCCGGGGGTCACCACGGGCCCCCCCAGGGCATGCTGGGCCACACCGGCGCCCCCACCTTCCCGCCCATGCACCACCCCATGGCCGGCCATCACCCCCAGCCCACAGGGCCAATGGGTGGAGCCAATCAACCAATGGCAGGGCGTGTCCTGCCCACCTCCGCTCCTCCTGGCGGGCCTCCCCAGCCCAACATGCCCGCCATGATGGGCCCCCGACACCCTGGAGCTCCCAACGGCATGTACCCCACCCCTCCGCCTGCACAGCCTGATGGGATAGCGCCGGCGCCGGTTGGACCTCCAGTCACCGCTCCCTCCCGCGTGACTGAAAACTAGAGCACCCACCCACTCTGGGACCCAGGACCTCCCGACACACCAAACCAAACATACCCCgcccgcccccc

Function

symbol description
smarcc1 Enables protein N-terminus binding activity. Contributes to nucleosomal DNA binding activity. Involved in chromatin remodeling; nucleosome disassembly; and positive regulation of transcription, DNA-templated. Located in cytoplasm and nucleoplasm. Part of SWI/SNF complex. Biomarker of renal cell carcinoma.

NR:

description
PREDICTED: SWI/SNF complex subunit SMARCC1-like isoform X3

GO: NA

KEGG:

id description
K11649 SMARCC; SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002382 True 3803 mRNA 0.62 30 12185034 12203026

Neighbor

gene id symbol gene type direction distance location
AMCG00002374 NA coding downstream 13353 12145146 ~ 12171681 (-)
AMCG00002376 NA coding downstream 42690 12140005 ~ 12142344 (-)
AMCG00002375 NA coding downstream 45278 12124198 ~ 12139756 (-)
AMCG00002377 NA coding downstream 84114 12099324 ~ 12100920 (-)
AMCG00002373 LOC101076725,LOC106573767,LOC106598349,LOC106598644,LOC106597130 coding downstream 88392 12082111 ~ 12096642 (-)
AMCG00002384 NA coding upstream 45121 12248147 ~ 12248946 (-)
AMCG00002383 NA coding upstream 48266 12251292 ~ 12260406 (-)
AMCG00002385 tsnare1,si:ch211-208k15.1,LOC106605505,LOC107679652 coding upstream 280868 12483894 ~ 12504026 (-)
AMCG00002389 NA coding upstream 779803 12982829 ~ 12997422 (-)
AMCG00002392 NA coding upstream 829603 13032629 ~ 13044363 (-)
G122726 NA non-coding downstream 140015 12043315 ~ 12045019 (-)
G122621 NA non-coding downstream 320978 11862903 ~ 11864056 (-)
G122636 NA non-coding downstream 325709 11857391 ~ 11859325 (-)
G122633 NA non-coding downstream 336842 11847081 ~ 11848192 (-)
G122632 NA non-coding downstream 339363 11844392 ~ 11845671 (-)
G122858 NA non-coding upstream 797815 13000841 ~ 13005335 (-)
G122869 NA non-coding upstream 849000 13052026 ~ 13052390 (-)
G122877 NA non-coding upstream 864195 13067221 ~ 13067627 (-)
G122879 NA non-coding upstream 865808 13068834 ~ 13069238 (-)
G122897 NA non-coding upstream 938842 13141868 ~ 13147672 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 178682 11995828 ~ 12006352 (-)
AMCG00002351 NA other downstream 312172 11869607 ~ 11872862 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other downstream 330143 11848470 ~ 11854891 (-)
G122597 NA other downstream 450710 11731617 ~ 11734324 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other downstream 499945 11647911 ~ 11685089 (-)
G122862 NA other upstream 825171 13028197 ~ 13029406 (-)
AMCG00002421 sec61b,LOC102796100 other upstream 1446201 13649227 ~ 13654247 (-)
G123263 NA other upstream 2738234 14941260 ~ 14946311 (-)
G123585 NA other upstream 4633130 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 4755136 16958162 ~ 16974301 (-)

Expression


Co-expression Network