AMCG00002448


Basic Information

Item Value
gene id AMCG00002448
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 14696398 ~ 14731127 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002448
AAAGAAGTGAAAGACGTGTTCTCTCCCATCGTGTTTGAAGCTGCCTACAGCCTGGGACCACATGTGATTGAGAACAAGGACGAGAAGGACAAGGAGCTGCCGCCACTGATGCCAGTCCTGCGCTGGAAGAAAGGGGACAAGATTGCTCAGAGGAATCAGACTTGGTTTGAGAAAAACTGCTTGTCTGAGGACTGTGCTGCAGATCTCAGGTTGCTTGGCAAGCTGCTGCTCTCTGGTGTGCACAGCCGACCTCACCTAGCCCTGGGAGGGGTGAAGAATATCTCGTTGAACTTGTCTATCTCCAACGCCGGGGATGACGCTTACGACACTAACATCTACTTCAACTTCTCCAAAGAGCTCTACTTCATCAAGATGTGGCAGAAGGAAGACAAGGGCATTTCCTGCGAATTGTTGGAGCTGGACTTCCTGAAATGCAGCGTGGGATTTCCGTTTATGAGGGCGCAGACCAAGTACCACTTAGCCGTGATCTTTGATACCAGCCACCTTTCTGGGGCCGAGGAGAACTTGGCGTTCCTGGTCACTGCACAAAGTGCAAACCCAGAGCACGAGAGCAAGCTGTCAGACAACACTCTCCTCCTGTCTATTCCTCTCGTCCATGAAGTGGATACAGCAATCACAGGGCTGATCTCGCCGACCACCTTTGCTTATGGGGACTCGATTGACGCATCCCATTTCATGCTGCTGGAGGATATGGTGTGCCACTTTCAGCCTCTCAACTTCACCTTCcagGTTATAAATAACGGGCCGAGCAGTCTCCCGGGCTCCACTGTTCACATCAGAATTCCCAACCGGCTAGTTGGCAGCGGGGCAGACATGTTCCATATCCTGGACACGGAGGTTGTTGAAGACAGAGGGAACTGCACCTTCCACAGAAACCCCACCCCCTGCAACGTCCCTCAGGACAAGGAGAACATCTTCCACACCATCTTCTCCTTCTTTACCAAGTCTGGGAGGAAAGTCCTGGACTGTGACAGACCCGGACGATCCTGTCTAATGATCACTTGCCACTTAGGCTCATTAGCAAAAGAAGAAACGCAGAACATTGACGTCCGAATGCTACTGAACACGGAGATACTGAAGAGGGACAGTTCatcggtcatccagtttgtgACGAGGGGCAGTGTGATGGTGGACAACAGGGCCGTGGAGGTCCCGAATGGACTGCCGGAAGACACTTCCGTGATGTTTGAGGCACTACACAATCAGGAGCCCAGAGGCTATGTGGTCGGCTGGATCATTGCCATCAGTCTCCTCATAGGAATCCTCATATTCCTGCTGCTGGCAGTGCTGCTCTGGAAGATGGGATTCTTTCGTCGGCGGTACAAGGAGATAATCGAGGCGGAGAAGAACAGGAAGGACAGCGATGAGAGCTGGGACTGGGTCCAGAAATCCCAGTGA

Function

GO:

id name namespace
GO:0048514 blood vessel morphogenesis biological_process
GO:0002040 sprouting angiogenesis biological_process
GO:0001525 angiogenesis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002448 True 1419 mRNA 0.52 13 14696398 14731127

Neighbor

gene id symbol gene type direction distance location
AMCG00002445 fignl1 coding downstream 13969 14680384 ~ 14682429 (-)
AMCG00002438 NA coding downstream 326578 14365055 ~ 14369820 (-)
AMCG00002435 NA coding downstream 544553 14127804 ~ 14151845 (-)
AMCG00002436 NA coding downstream 594999 14070785 ~ 14101399 (-)
AMCG00002434 NA coding downstream 652494 13990906 ~ 14043904 (-)
AMCG00002447 NA coding upstream 30710 14761837 ~ 14787948 (-)
AMCG00002446 NA coding upstream 63960 14795087 ~ 14849774 (-)
AMCG00002452 LOC104940895 coding upstream 180328 14911455 ~ 14920505 (-)
AMCG00002453 NA coding upstream 244979 14976106 ~ 15005344 (-)
AMCG00002454 NA coding upstream 329720 15060847 ~ 15111866 (-)
G123204 NA non-coding downstream 3399 14691970 ~ 14692999 (-)
G123179 NA non-coding downstream 101856 14588809 ~ 14594542 (-)
G123178 NA non-coding downstream 107640 14587214 ~ 14588758 (-)
G123177 NA non-coding downstream 129331 14566247 ~ 14567067 (-)
G123175 NA non-coding downstream 153378 14542821 ~ 14543020 (-)
G123346 NA non-coding upstream 750017 15481144 ~ 15483716 (-)
G123385 NA non-coding upstream 956328 15687455 ~ 15689341 (-)
G123401 NA non-coding upstream 991806 15722933 ~ 15723137 (-)
G123405 NA non-coding upstream 1059478 15790605 ~ 15795172 (-)
G123452 NA non-coding upstream 1393155 16124282 ~ 16127405 (-)
AMCG00002421 sec61b,LOC102796100 other downstream 1042151 13649227 ~ 13654247 (-)
G122862 NA other downstream 1666992 13028197 ~ 13029406 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 2690046 11995828 ~ 12006352 (-)
AMCG00002351 NA other downstream 2823536 11869607 ~ 11872862 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other downstream 2841507 11848470 ~ 11854891 (-)
G123263 NA other upstream 210133 14941260 ~ 14946311 (-)
G123585 NA other upstream 2105029 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 2227035 16958162 ~ 16974301 (-)
AMCG00002524 NA other upstream 2958881 17690008 ~ 17706289 (-)
G123829 NA other upstream 3191325 17922452 ~ 17989465 (-)

Expression


Co-expression Network