AMCG00002455 (LOC102778215)


Basic Information

Item Value
gene id AMCG00002455
gene name LOC102778215
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 15338087 ~ 15362568 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002455
TTTGGGGGCGTTGACGTCACTGACGTTTCTCCCGCAGTACCCAGGAAGTAGCGGCGCAATTGTTGTTTCGACAGAtttcttgtttctctgcttGTTTTGTGAGTCGGGAATGGCGACGTTTATTTCAGTGCCGTTAAAGAAGTCGTCCGAGGTGGACTTGGTGAAACCTCTGTCCAAGTTCGTCAGCGCCACATATGGGGGCTCAGAGGAGCAGTCGGAGTATATTCGGGCCGTGGAAGAGTTGAACAAGCTGCGCAAAAGTGCACTCGGGAGGCCGCTAGACAAACACGAAAGCTCGCTGGAGATCCTCCTGAGATACTATGATCAGCTGTGTGCTGTTGAACCCAAATTTCCCTTTTCCGAGAACCAGttgtgtttAACCTTCACATGGAAAGATGCATTTGACAAAGGTTCCCTTTTTGGTGGCTCTGTCAAGCTTGCCCTGGCTAGTGTGGGATATGAGAAGAGCTGCGTTTTGTTTAATGTTGGAGCCCTGGCCAGCCAGATTGCCTCCGAGCAGAACCTGGACAATGATGAAGGCCTGAAGGCGGCTGCAAAGTTTTATCAGCTGGCCAGCGGGGCCTTCTCCCACATCAAAGACACCGTGCTGTCCGCTCTGAACCGCGAGCCCACCATGGACATCTCCCCAGACACTGTGGGAACCCTGGGACAGATCATGCTGGCCCAGGCGCAGGAGGTCTTCTTCGTCAAAGCCACGTCAGacaaaaTGAAGGATGCCATCATTGCAAGGCTTGCCAACCAAGCTGCAGATTTCTATGGGGACGCCTTCAAGCAGTGCCAGTACAAGGAGAACTTGCCCAAGGAGGTGCTGCCAGTTCTGGCTGCCAAGCACTGCATCATGCAGGCTAATGCGGAGTATCACCAGTCTCTCCTTGCCAAGCAGCAGAAGAAATTTGGGGAGGAGATTGCCAGATTACAGcATGCAGCGGATTTGGTGAAAACGGTGGCCTCTCGCTATGATGAGTACGTCAATGTGAAAGATCTCTCCGACAAGATTACACGTGCCCTGACTGCTGCGAAAAAAGACAACGACTTCATCTACCACGACCGTGTTCCAGATCTGAAGGACCTGGACAGCATTGGAAAAGCCGCCTTAGTAAAGGCCACAGCAATACAAGTGCCCCTGAGCCAGAAGTTCACAGACCTGTTTGAGAAGATGGTGCCTATGGCTGTACAGAAGGCTATGAGCATCTACAACCAGAGGAAGGCTGAGATTGTCAACAGGCTAATAGCACAAATGAGAGAGGCAACAAATCTATGCAATGGAGTGCTGGCGTCGCTGAACCTGCCGGCTGCACTGGAGGACCTCTCTGGAGACAGTGTCCCTCAGTCGATCCTGGAGAAGTCGAGGGCCGTCATCCAACAGGGGGGCCTGCAGAACATTGAACAGCTGATCCGAGATCTGcctgagctgctgcagaggaaCAGAGAGATCCTGAATGAGGCATGTCTCCTTTCTCACAGTTCTCTGAAAATATTGGATGAAGAAGAAGCGACAGATAATGAACTAAGAAACAAGTTTACCCAGCGCTGGCAGCGAACCCCTTCCAGTGACCTCTACAAATCTCTGAGAGCAGAGGGAACAAGTTTCAGCAATGTTTTGGATAAGGCCGTGCAGGCAGACAAAGTGGTCAGAGAACAGTACAACACCCACTGCGAGATGATTGCCCTGCTCTGCAAACCTGAGGCTGAGCTCAATGCTGCTATTCCCTCCGCCAATCCAGCAAAAACTCTGCAGGGCAGCGAGGTGGTGGGTGTGCTCCGGTCCCTGCTGGCCAAGATGGATGAGGTGAAAAAGGAGCGCGAGCAGCTAGAGAACGACATCAAGTCCGCGCAGTTTGACATGACCACCAGGTTCCTCACTGCCCTAGCTCAGGACGGCGCCTTAAATGAGGAGGCTCTCTCGGTGACCGAGCTGGACAACATCTACGGTGGATACACCCAGAAGGTCCAGCAGAGCTTGAAGACCCAGGAGGAGATTCTGGGGAATGTGCAGACATCCCACCAGGAGTTCTCCACAATGAAGCAATCCAATTCAGAGGCCAACCAAAGAGAGGAGGTGATGAAGAAACTGGCCTCGGCTCATGACAGCTACATCGAGATCTCGAAGAATCTGAGAGAAGGGACCAAGttttataacgATCTCACAGAAATCCTGCTGAAGTTCCAAAACAAGTGCAGTGACATTGTTTTTGCACGTAAAACGGAACGAGATGAACTACTCAAGGAGCTGCAGCAGAGCATCGCCCGTGAGCCCAGTGCTCCCTCTTTCCCTTCCGTGCCCGCGTACCAGTCCAGCACTCCCAGCCCTGCTGCCAGCACCGGCCCCAGCATCCCCACACCGGCCCCGAGAACCATGTTTcaGAGCTCTTCTCAGCCCCCGGCACGCCCCCCGCCTCCTACATTCTCTACTCCAGCCACCAGCACCACCCCGAGCACCACCCCGAGCACCAACGTGCCCCCCCCAGCTGCGGTGCCGACCAGCGCAGTTCCTCCCCCTGCCAATCCATCGATGGTTCATCCCGGAGCCCCCTCACAAGCGCAGGGTCCCCCCTACCCAACATACCCGGGATACCCAGGGTATGTCCCGATGCCCATGGGCTACAATGCCTATGCTTATGGTCAGTATGGTATGCCGTACATGTACCAGACTCCAGGACAAGCACCTTTTCCTGGGGCCCAGCAGCCCCAGCAACACCCTTACCCCTACCAGCAGCAGccccagcagccccagcagccccagcagcCCTACTACCCCCAGTAGTAAAGCACTCCAGCTGTGGGGATGCACTTAGACCAATAACTGCTTTTGTCTACCTTACTTTGGTTATTTCtccaaatgcaattttattatttctctctgcTCTAACATACCTTTCTATTGTTTGTCTGTtatttgctttgtgtgtttttttttttttttttttttttttNNNNNNNNNNGCTCATAGCACTACAGGACTGTTTTGCTGGTATAACACTAGGGTGGACCTCCGGATGCAATGTTGTGTACTAATTCCAATTTAAATAGGTATGCTCAGTCAATAAGAGTCCTTCTTGTCTCAGAGAGATCCCTCGCAAAGGGAAGACTGACATTAATTTTACTGCAAAGATTCACTTTTGcaaatagattttgttttcttaagacGAATGCCGGTAcatactgtaataaaacaaactttgttCTCTGTAGATGTTTTTGTTCTAGAAAATTATTTTGGGGACTGGAATTCTGACATCTGAGAAATACTTTATACAGACTACGGTAAAACTGACTATATTTGCTCCTTTAAAGCTGTATGTTGGTTATCTATATCTGCTATTTTCTCTTACAATCAATGCCTTGTAAATCacacagttaaattaaaaaatatataaaattccATTATTGTTAATAGaatcatatgtattttttttttctgggcaAATTAAGGGATTACTGTACATTGGTCGTTTCcagacatacattttttctgtgtgATTTCTGGTTGACGTTTTTGCTTAAATAAAAGGCAGATAAGCTGTTTCATTAAGGATGGCTTTGCAAAGGGTTTTCATAAGAAAATGTCTAGGAAGTGTACAGAGGAAGTTACTTAAAACTCAATTGGGAGTGACTTGAGATCTTTAGATGATATACCAATGGATTTGTCTTCCTCTTTAATATTTAAGCTTTCCCCCAATGCTTACTGTTCCTAGCATATGATAGTCAAGATTGACACCACAAAAGAGAATTACACAGAAAACATACAGGATATAGAAATGAAATAACATGTAACTGTGAAAGGTGTACACTACTCTTGTAAGCACAGTACAGATACTAGGAGCTGGATTGAGGGTAATTACTTTCCTTCACAACAGCCGCTACCTTTGAATGGTTCCAACGATTCTGAAAATTTGAGTGTTCTGGAGATATGTTCTGAATGCTCTGTTAATAGGCTGTTAGCTTCTGAAAATAGAAGGCAATCCGAGAGAAGGTATTCAGTCTTCTATTATAACCTGAATACTACTATGTACagaaaaaatcataaaaaaaataatcataataatcgtGACTGCTTcactaataaataatttcatcTGGGAGAAAATCTTTTCGTTTGTGTGCTTGCTCCCTTTCTGTGTTAATGCAAAGGTTCTACTTTGTATtatctgagtttttttttttcttcccctcaatTATTTACTGCTGACTTAAAGTTCACTGAAAAGGGTTatgcaattgaaaatgttttcttgaatgGCAGTATTAACCCTTTGAAAAACATCAGCCATTAATATTCAAAGCTGTGAATAATTGATCTGAACTTTGCGTTTCTAGCCTTCACCAGGCGGACgtttttaaaaattgttaaCTAGTcttatagtttgttttgttgtcaccATGATGACTAAAAATCCACATTCTCTAAAAACTCAAGTCAACTGCAGgtttaatacagtataatttaataaaggcAATTATTTACCCAAGTGCAAGGACACTTATCTTTCCCAATTCATTAAaagatttatttacagttatatatatatatgtctttattATACCTGTCTACTTTGAAATGTCATTAAAGGTCAGCTGGTCCCCACTTTCAACAAAAAGGAGTTTGAGAATAAATGtcttcaccttcaaaatcacatcaCAAATGTCAGGACACTTCATTG

Function

NR:

description
PREDICTED: programmed cell death 6-interacting protein-like isoform X2

GO: NA

KEGG:

id description
K12200 PDCD6IP, ALIX, RIM20; programmed cell death 6-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002455 True 4683 mRNA 0.46 18 15338087 15362568

Neighbor

gene id symbol gene type direction distance location
AMCG00002454 NA coding downstream 226221 15060847 ~ 15111866 (-)
AMCG00002453 NA coding downstream 332743 14976106 ~ 15005344 (-)
AMCG00002452 LOC104940895 coding downstream 417582 14911455 ~ 14920505 (-)
AMCG00002446 NA coding downstream 488313 14795087 ~ 14849774 (-)
AMCG00002447 NA coding downstream 550139 14761837 ~ 14787948 (-)
AMCG00002460 fbxl2,LOC107742856,LOC107706183,LOC107696556 coding upstream 145880 15508448 ~ 15534012 (-)
AMCG00002463 crtap,LOC106588754,LOC103394375 coding upstream 244473 15607041 ~ 15616265 (-)
AMCG00002464 LOC107714420,LOC107697280,LOC107720166,LOC107661006,LOC107581689,LOC107551731 coding upstream 263630 15626198 ~ 15630089 (-)
AMCG00002470 NA coding upstream 460661 15823229 ~ 15837658 (-)
AMCG00002472 NA coding upstream 476311 15838879 ~ 15923127 (-)
G123204 NA non-coding downstream 645088 14691970 ~ 14692999 (-)
G123179 NA non-coding downstream 743545 14588809 ~ 14594542 (-)
G123178 NA non-coding downstream 749329 14587214 ~ 14588758 (-)
G123177 NA non-coding downstream 771020 14566247 ~ 14567067 (-)
G123175 NA non-coding downstream 795067 14542821 ~ 14543020 (-)
G123346 NA non-coding upstream 118576 15481144 ~ 15483716 (-)
G123385 NA non-coding upstream 324887 15687455 ~ 15689341 (-)
G123401 NA non-coding upstream 360365 15722933 ~ 15723137 (-)
G123405 NA non-coding upstream 428037 15790605 ~ 15795172 (-)
G123452 NA non-coding upstream 761714 16124282 ~ 16127405 (-)
G123263 NA other downstream 391776 14941260 ~ 14946311 (-)
AMCG00002421 sec61b,LOC102796100 other downstream 1683840 13649227 ~ 13654247 (-)
G122862 NA other downstream 2308681 13028197 ~ 13029406 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 3331735 11995828 ~ 12006352 (-)
AMCG00002351 NA other downstream 3465225 11869607 ~ 11872862 (-)
G123585 NA other upstream 1473588 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 1595594 16958162 ~ 16974301 (-)
AMCG00002524 NA other upstream 2327440 17690008 ~ 17706289 (-)
G123829 NA other upstream 2559884 17922452 ~ 17989465 (-)
AMCG00002533 ulk4,LOC107704090 other upstream 2570896 17933464 ~ 18041573 (-)

Expression


Co-expression Network