AMCG00002592


Basic Information

Item Value
gene id AMCG00002592
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 21815465 ~ 21837472 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002592
ttggaatattttaatttgtaaactgACCAGTCTCTCCATCTTTTTCAGGAGGTACAAGAGACATTGGATCTGCACTGACGAGGATGTGTATGAGACACAGAAGTATAGAATCGAAACTTCGACAGTTTTCTGCGGCTTTCATCGACTGCCTGATTAACCCACTTCAGGACCAGATGGAggaatggaagaaggtggctaACACACTGGATAAAGACCACGCAAAAGAATACAAGAAAGCCCGACAGGAGATCAAAAAGAAATCTTCAGACACACTGAAGCTGCAGAAGAAAGCAAAGAAagGGAGAGGGGACATCCAACCCCAGCTGGATAGTGCCCTGCAGGATGTCAACGACAAGTATCTGCTGCTGGAGGAGACTGAGAAGCAGGCCGTCCGCAAGGCCCTCATCGAGGAGAGAGGGCGCTTCTGTGCGTTTGTTTCCATGCTGCGTCCCGTTGTGGAGGAAGAGATCTCCATGCTTGGAGAGATCACTCACCTGCAGACCATTGCCGATGACCTGAAGTCCCTGACTATGGACCCTCACAAGCTGCCACCCGCCAGCGAACAGGTCATTCTCGATCTCAAAGGCTCCGACTATAACTGGTCGTATCAGACTCCTCCGTCCTCTCCCAGCACTACGATGTCACGGAAATCCAGTGTGTGCAGCAGTCTGAACAGCGTTAACAGTAGCGACTCCAGGTCGAGCGGGTCGCACTCTCACTCACCCACTTCACACTATCGCTACCGCAGCTCCACCCTGCCCCAGCAGGCCCCCGTCAGGCTGTCCAGCGTGTCGTCCCACGACTCGGGCTTCATCTCTCAGGACGCCTTCCAGTCCAAGTCCCCCTCCCCCATGCCCCCAGAGACCATCCCTCAGACCTCCTCCAGCTCCGCCTCCTCTGACGCCTCTGAGACCTGCCAGTCCATGAGCGAGTGCAGCTCCCCCACCTCCGTCAGCTCCGGCTCCACAATGGGGGGGGCCTGGGCCTCTGCTGAAAAGTTGTCAAATGGTTACGATCACTACAGCCCATCCACCGATCCACCCATCTTGACTCCGAATGGCTCAGCTGGCCAGTtccctgtcccccccccccactcctcctcccGGGCTTGGTCACGGCCTGGCTCTTCCTTGCTCCCCGATTACCCCCTCTATTGCACCCTGGGGCCCGGCATGCTCCCCTCGTCCAAGATCCCCAGCTGgaagGACTGGGCCAAACCAGGCCCCTATGACCAGCCCATGGTGAACACCCTACAGAGACGCAAGGACAAGCGTGAGCCAGTGGAGCCCAGTCCTCAGGCCACACAGCCAGCTCCAGGGGACGACGCTCAGAGACACCGCAGCATGACCGTGTCCACGACACCCAGGGGGGAGGAGATGGAGCCCCATGAAGAGCTGGCCCTCGCTCTGACCCGCGGGCTGCAGCTGGACACGCAGCGCTCCAGCCGGGACTCCCTGCAGTGCTCCAGCGGCTACAGCACCCAGACCACCACGCCCTGCTGCTCCGAGGACACCATCCCTTCACAAGTGTCGGATTATGACTATTTCTCGGTCAGTGGGGACCAGGAGGTGGACCAGCAGGATTTCGACAAGTCCTCCACCATCCCTCGCAACAGTGACATCAGCCAGTCCTACCGTAAAATGTTCCAAGCCAAACGACCTGCCTCCACCGCTGGCATCCCCTCCACCGCGGGGCCGGTCATCATCACCCCTGGCGTGGCCACCATCCGCCGCACGCCCTCCACCAAGCCCTCCGTACGGCGTGCCGCGGTAGGGGGTGGCCCCATCCCCATCAAGACACCCATGATCCCAGTGAAGACGCCCACTGTACCGGACCTCCCGGGGGGCTTCCCCTGCAGCTTAGCGGCCGAAGAGTCCGTGGAGCAGGGCAGCCCGGAATCGCCCATGGCAGCGGCGGTGGAGAGCGAGGCCTGGAGCGGCCAGGCTACCACCAACCCTCCCATCCCTCCCCCGCAGCCCAGCGATGCAGAGATTGAGAGCGGGGTCCCACAGGCCTCCGGGAGCGAGGACACCCTAGCTGAAGAGGCCTCTCAGGAGGCGGACCCTCAGGGCGATAACATGCTCCTCGCCATCCGCAGGGGAGTTAAACTGAAGAAGACGATGACCAATGACAGATCCGCACCCCGCATTGCATAGAAGCAGAGTCTCCAGGGGCCCCATATGAGTTTTATACTGCTTTCAAACATGTGACAATACTCAGTACGGGCCAAACAGGCTGCGTCCATTCCAGAAAACATCGGGGAGAATTATTCTTTTATCTgtcttgtctttgtttttgaaggtgCCGTGTGGTGGACCTGGCtaggggagagggggaagcgAGGTTCCCTTTGAATATTTTTCTAAAcgattggaaaaataaatgcaacaatcATTTCTTCTCATTCATTTTGGTTTAATCTTGTACATACTTTTAACCCCCGGATGTTTTGCAAATTGCTCCTCCTCCTTGCTTCGCCCACCTCCTGATGTACCCGAAGGTGCCAAATTTTGTCTTGGAAACTGTTGAAATGACCGGGATTGTGTTACACAAACAGATGGAACATTCATGAACTTTTGATTTTACTGCAGATACGTGACAGAGGTGTTCAGAGACTGAagcccacacacacagtggggAGTGAactctgctttttctttttcgaGATGATTGTACTTGCTTGGTTAGCAATCAGTTGTCTGAAGTATTGGAAGGGTAAATCTTTTTTGAGAGGTGATGCAGCAAATAACCAGCTAACAGTAAGCAATACTTTGCAGGTGAAGCCTGGCTTtgatactgtatattttaaattataaatgtgccATGACAAAAACAGgacactgttaaaaataaaacaaaaaacattaaaaacaaaaacaaacacctgtAAAGAAAGACATCTGCTAATGGCTTATCAGTACACATATTATCAAATTGCCATATCTGattattacatttatgatttgtCTAGGCTATAGTGAGTCTtgtgttctgtttctttttattcttcacTGTACACTAAATTATGGATCATACTGCATGCAACCTTAACTCTACACTTAAGGTTAACCTACACCCTGCAGGCTCAATACAGTATCGCATTGCTTCATACGTCTAGGGAAATCGTATACTTTAAGgctaaagcaatttaaaatttatatacaaatatatatatactttattaagTATTATTGAAAGGATTctctttttttaactgtattttttaagacCCAAGTTTGGTATAATTTCAGTTTAAGCACTGATATTGCATTCTGAAGGGGCAGTAGCCGAGATAATCAATAATTGCtagtaaattgtaaatatttcattcaaatgGCAATCCAGGGGCTTAATTTATTGTTTATCTTTAGATTCCCCCCCAATATTTTGGCTCaggtatgcatttgttttcagctatgtctgtttatattttaaaatgttgctgtgttttacagaaatgcatacacacaattctgttcaaaatgtcatggcttcatgtatttatacctgtaagaaaaaaacaaacttcattGTAATTGAACAAGTGGTGAGGCTTGAATCATTTTCAGTGACTTAATTGACCTCAGAATAAGGGCATGCCTAATGACTGGGATAGAGTATTGCTTGTGCTGAAGGTTTCACATCCTTTGTACCCATTCTGAGCCTATTTCAGCTGAACTGTAAAATGAATTCAATAATCCAGCTTCTCTGCTATATATTCATCATTTTTGTTCAAAAGCTTTACACTGTTTTCCCCACGGAAGCATACAAATGCAGTCAGAGCCAAAACAGAGCCCATTCACCCAGCTACACCCAAGGACTGTAGTTCCCAAAGGATAATAGAGTACACTGTTCATTGTGTATCGTCTAGGACTGTaaactgtattactgtattaactgtattattgctcTTTTGGCACAAATCAAAGTATACCCTTAGAATTGTACAGTCTTGTGTACAAAGATCATCCAgtgtattgtaaatattgtcAGATGCAAGCTTCAGTTGACATCCTCTCCAAAAAACCAATCACACACAACAAGCACTAAGTGTCTGGGCATCTTCCTGTCGTCTCTGTAGTGTTGTAGGGCCAACGTGCTGCGCGACAGTAGTGCCCGACCAAGAAGATGCATGGGTGTTGAAATGCAACAATTCAGAAGAACCAGGTTAGTTGCAAAACTcaaggaaaaaagtgaaaataaaaggatGTGTTGGGTAGAACTGTTGTGGGTCTCTTAAGGAAACTCATTTGCAGCTCACTCATTGTGTATGCAAACGGGGAAAAGGTGCACAGGAGCCAAGGAATGTCTTGAAGCATTTAAAACACGATTACCACTAATGTTTTACGGCATCGAAATGAGGTTTTGGAGATGTTTGAATCTTCAGAGAGATTGTAACTGATTAAAAGCctttttattaacaattaactTTATAAGCTTTGATGTTTGGCACTGAAAGTCTGGGGTTGAGTATACTGTGAATCAGTTGTACCAGCTGTTCAAAGCCAGTATGTGCGAGTACACTCactgtgtgttgcattttatGCACTATCatcctattttatttaaatatataagtacTTAGTTTATCCAATTTAATTTCCAGCCAGCCCCTGGTTTGAGGTGTAATTTAAACGAACTGAAGCTTGTTGTAATCTTTTAAAGACTTGCTTCTAAAAACCGTGAATTCTAAAATAGTTTCATGTAGCTGATGCATTGTGCATATGATGCTAAAACTATTACGTGGTTACCATCTCatattacagaaatgttttgatATCGTCAGTGTAGAAACCTTTAGTTGtataatgctgtattttttttttaaattacagccGTTAATGTTTAGGTATTTAACTTCAAGCATACCAcaaatataaaagttaaaaaaagaataaaaaataaagttgccAAATTATATGTAACAATGTGTAAGCTGGTTAAAATATCAGACCTAGTTTAAgaagttcctgtgtttttgcatATTGTAAAAGCAGACTGTCACCTTTTAAGAATAATAGATTTTGTTTCTATAATGGTTTAGTTGCTAGTTTGTACTGAGAGTTGATCTCTCCCGTGCCATTCTCAACAGGCTGTAAATTGGTCGGTTCCTGTATCGTCTCCCTTTTTTTGTGTAATGATTGCTTCAGCCTATATTAAAGAGAAATGTCAGAATTGTCTGTGTCCTAACCTGCTatttgagggggaaaaaacattgtacCTGTTGATTTGAATTAGAATGTGTTAAGAATAAATGTTAggttcatttttctttccatattCTTGGTTTTAGAAACTTTTTGCAGATTGTTTTTACTATCATGTAATCTcacatttaccttttctttgCGTAACACACTCAATGTATCTAAATTGCACCATTTTATTGGAAGTGGATACTGCCCGCCACATGTGAGACTGTTTAACTGAGCAGATTTATAACCTCTGGATTAAACTCCAATCGGAACATTGCACCAAACTGTAGAGGTCGTGAAAATATAGCGAATAGTATGTGATGATTAGAAAAGAGATTTAGAACAGATgctgtaatttatatattttatcaagGTTGTCATATGTTGTTCTTAGTTCTTAATAAATGATC

Function

GO: NA

KEGG:

id description
K20128 MTSS1; metastasis suppressor protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002592 True 5605 mRNA 0.45 12 21815465 21837472

Neighbor

gene id symbol gene type direction distance location
AMCG00002593 tatdn1,LOC102775897 coding downstream 3333 21805344 ~ 21812132 (-)
AMCG00002591 rnf139,LOC106569923 coding downstream 12511 21795354 ~ 21802954 (-)
AMCG00002589 tmem65,LOC108429253,LOC103374125 coding downstream 37004 21758833 ~ 21778461 (-)
AMCG00002585 NA coding downstream 170419 21644360 ~ 21645046 (-)
AMCG00002586 NA coding downstream 454922 21355932 ~ 21360543 (-)
AMCG00002595 scgn,LOC106606120 coding upstream 183104 22020576 ~ 22039356 (-)
AMCG00002594 NA coding upstream 203908 22041380 ~ 22109859 (-)
AMCG00002597 NA coding upstream 341460 22178932 ~ 22218008 (-)
AMCG00002602 NA coding upstream 464849 22302321 ~ 22323050 (-)
AMCG00002603 NA coding upstream 485714 22323186 ~ 22348504 (-)
G124402 NA non-coding downstream 20477 21794773 ~ 21794988 (-)
G124327 NA non-coding downstream 698730 20979097 ~ 21116735 (-)
G124222 NA non-coding downstream 1274942 20540307 ~ 20540523 (-)
G124175 NA non-coding downstream 1481011 20302072 ~ 20334454 (-)
G124068 NA non-coding downstream 2531172 19283878 ~ 19284293 (-)
G124429 NA non-coding upstream 81228 21918700 ~ 21918915 (-)
G124431 NA non-coding upstream 88135 21925607 ~ 21925856 (-)
G124434 NA non-coding upstream 103705 21941177 ~ 21953671 (-)
G124535 NA non-coding upstream 599414 22436886 ~ 22438729 (-)
G124582 NA non-coding upstream 760527 22597999 ~ 22598555 (-)
AMCG00002584 NA other downstream 136920 21647055 ~ 21678545 (-)
AMCG00002533 ulk4,LOC107704090 other downstream 3773892 17933464 ~ 18041573 (-)
G123829 NA other downstream 3826000 17922452 ~ 17989465 (-)
AMCG00002524 NA other downstream 4109176 17690008 ~ 17706289 (-)
AMCG00002503 NA other downstream 4841164 16958162 ~ 16974301 (-)
AMCG00002596 NA other upstream 63820 21901292 ~ 21902597 (-)
G124719 NA other upstream 1248522 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other upstream 1344449 23181921 ~ 23192656 (-)
G124829 NA other upstream 2424093 24261565 ~ 24261823 (-)
G124848 NA other upstream 2454315 24291787 ~ 24339566 (-)

Expression


Co-expression Network