AMCG00002682


Basic Information

Item Value
gene id AMCG00002682
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 26267052 ~ 26279621 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002682
ATGGCCGCAGAGGGAAAGGAAAGACTTCCCAGCATGCAAAGCGCTTCTAAGAGATTTCGGCCATCCTCGCGAGAGGCGgaGTTGGAGAATGAGAACAAGTGTACATTTGAGCGGTGCTCAGCTGTGATGGACAACAGGAAGAAACAAGACCACAACGTCAAGAGGGGGCTGGGCTGGCTGCTGAGCAACATCGACGAGAATTACACTGCCTTATATGAGCACATGGAGAAGGACACAGCCGAGCAGAGAGCCCTGGAGGAGCAGGACAAGCGCGAGAGAGCAGAGCAAGTGGTttggcaggagagagagagaggtaggagGCCGAGCGAGAAGGGAGGCCCACGCtggatgaggaagaggaggcggTGGAGGATGGCACCATGTCGAACCCTTTTCAGCCCATCACTGACATTATTACTGAGATTGAGGACAAGCTGA
>TU156942
TAATTAGAATCTTTAGGGTGAACAAACTAATTGTATAAATCGAGACCTCTAGAACTTCTGAAAATGCACCATTTACTCAACTAAATCTGTATAtctgtaaatataatttgaaatacaacTCACGTTTACTTCCCAAAGAATCCGTGTCTTTACATGTAGGAAGGACTACTTTATACCATCACCTAAATCCAGAATTGGCATATGGCACATTAACAAACTGAACACCTGTATTCAGATTGAATACTGAAGAAAGCTTAGGTAAACCAGATCAACAAATCTGGAACTGGATTTTAAACTGGTTAAATTTAAGATTGAAGGCTTATCTAAAATGCAGTCTGGGCCCCAAGCTCCTGGTGAATTTCCATTTCTACAGGCTCTTGctagagattttaaaaatggattACCAGAAgtgacagaaatgcatttttttttttttttttatacaaaactTCTAATTCAcacaatttgattatttttttaataaggtCTACAATTTACTATATCTTTAAATGTCAGGATAGCAAGGaatttacttttgaaaaacTAGCATCTGTTTTGACCGTTTTAAATAGAATGCAACTATTTCAAACATCAGGTACACTGGTTTAGGCATATAAAccaatatattgaatatatatgcCAAATCCACAGACTTGTACACATGGCATAAAGTACCATAGCATATTAAAAATGACCACCACAAGTTGTTTTTCTCcactggatttatttataacaatttgGGAAAATGTGAATTTACTTCTCGCCCCCCTGCTGCTCTGGCATACTCCTGATGATGTCCGAGTCACCTGGTCAATGATGGCCAGTGTGCATACTCTGTAGTATTTACCACAGGCTGTGCCAAGTTCAATGTTATTTCCACTGTAATGGTGGACTCCAGTCTTGGCTAACATGGCGTAGTATTCAATTTCGgattttTCAGAGCAGGGCAGTTGTTGGCCAGGATGACCAGCTTGGCTTTGCCCTGACGGATCATCTTCAGTGTCTGTTTGTACCCAAGCACGTATTTACCACTTTTCATCACCAGCTGGAGCCGGGAGTTTATGGACTCCAGGGACTTTTTCCGTTTTCTTGGCGGCGACCATTTTCGCGGTTCACTCCGTTCTGGTCCAACCTAAACCAAACAAATGAGAGGTTAACATCTCATTTTCGAGAAACCCTGGTCTCACTATCtcgaattaaattaaattccaatgTAATTTATCACAAAATACGGAGCTCAACTTACCAGACTTGCAACTCAAAAATGGCCGCAGAGGGAAAGGAAAGACTTCCCAGCATGCAAAGCGCTTCTAAGAGATTTCGGCCATCCTCGCGAGAGGCGGTATGACAAAGAGGAAGCGAGTTCTtccgtgtgtgcgtgtgattgTGGGGAGCAAGTTAAGATCACTGCGCCAAATTCAGTTTCTTATGTGGTTCGAAATACGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002682 False 438 mRNA 0.55 2 26267052 26275651
TU156942 True 1447 lncRNA 0.39 4 26275469 26279621

Neighbor

gene id symbol gene type direction distance location
AMCG00002679 NA coding downstream 6746 26242687 ~ 26260306 (-)
AMCG00002680 NA coding downstream 33009 26208270 ~ 26234043 (-)
AMCG00002681 kcns2,LOC102221451 coding downstream 128556 26136957 ~ 26138496 (-)
AMCG00002673 osr2 coding downstream 261695 26002815 ~ 26005357 (-)
AMCG00002672 vps13b coding downstream 277489 25936202 ~ 25989563 (-)
AMCG00002689 NA coding upstream 38722 26318343 ~ 26319376 (-)
AMCG00002687 laptm4b,LOC107702097,LOC107724295,LOC107394696,LOC107565197,LOC105907721 coding upstream 43277 26322898 ~ 26338157 (-)
AMCG00002690 NA coding upstream 84341 26363962 ~ 26375896 (-)
AMCG00002685 rrm2b,LOC107556385,LOC108425040,LOC107394698,LOC106956493 coding upstream 102890 26382511 ~ 26390982 (-)
AMCG00002686 ubr5,LOC102786672 coding upstream 116261 26395882 ~ 26452474 (-)
G125200 NA non-coding downstream 24521 26242254 ~ 26242531 (-)
G125178 NA non-coding downstream 61181 26204892 ~ 26205871 (-)
G125160 NA non-coding downstream 136590 26126554 ~ 26130462 (-)
G125075 NA non-coding downstream 654755 25610117 ~ 25612297 (-)
G125035 LOC108241327,LOC106932681,LOC103371419,LOC103151587 non-coding downstream 813054 25451215 ~ 25453998 (-)
G125269 NA non-coding upstream 216328 26495949 ~ 26498450 (-)
G125291 NA non-coding upstream 376007 26655628 ~ 26655871 (-)
G125297 NA non-coding upstream 382083 26661704 ~ 26663029 (-)
G125361 fam91a1,LOC106570778,LOC106589122,LOC107702086,LOC107724353 non-coding upstream 634086 26913707 ~ 26915965 (-)
G125376 NA non-coding upstream 698063 26977684 ~ 26977920 (-)
G124848 NA other downstream 1927486 24291787 ~ 24339566 (-)
G124829 NA other downstream 2005229 24261565 ~ 24261823 (-)
G124719 NA other downstream 2970937 23085994 ~ 23296115 (-)
AMCG00002629 sqle,LOC106579093,LOC102798444,LOC106605546 other downstream 3074396 23181921 ~ 23192656 (-)
AMCG00002596 NA other downstream 4364455 21901292 ~ 21902597 (-)
AMCG00002688 NA other upstream 3719 26283340 ~ 26305923 (-)
AMCG00002694 NA other upstream 333855 26613476 ~ 26664767 (-)
AMCG00002705 klhl38a,LOC103030765,LOC106570780,LOC103376378,LOC108424967,LOC107724354,LOC107565193,LOC107702087,LOC104967054 other upstream 575272 26854893 ~ 26875246 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G232848 NA non-coding CI01000054 null 7007111 ~ 7009223 (+)
rainbow trout (Oncorhynchus mykiss) G231079 NA non-coding NC_048567.1 CM023221.2 18227984 ~ 18229371 (-)