AMCG00002694


Basic Information

Item Value
gene id AMCG00002694
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 26613476 ~ 26664767 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002694
ATGTCTCCTGGCTACATGACTCAAAGTACCTATCTTTCCATGTATGAGAAAAGGTATGGGCTGCCAGTGAACTTTCAGGCCATGCTGCTGCAGCCCAATAAGAAGACCATGAAGAAGCTGAGGGAGGTGCTGTATGATCTCTACAAACACCTAGACAGCAGTGCAGCCGCCATCATTGATAACAAATTTGTTGTTAGGgcCAAAGGCAGCAAGCTGGGAGTACAGTTCTTCATGCACTTATCATTCAGTATAGGTGCTTTAAAGGCGCCCCTGCTCCTCCGACTGAATCTCTCTCACATCAACCAGGAGCTGTCGCTGGACTCCACACACCAACTCTATATTGCCTCCTTCTGTATGCAGTTTCACCTGGAAAGCGATATCAGCGCTGCTCCATTTACAGCTTGTTCCTCAGTCCAAGCTTATGGCAAATaa
>TU157043
TGTCAATATCTGATTCTAAATTaatcatcataattaaaaagatCATTAAAATAGTCAAATTGTATCCCAGTTGGTAACTATGTATTCAAAATGTGTCTGAAAGgattaacatttcaatatttttaagttCAATTTCCTCCTCTGCAACTGTAAGACCGTGGACAAGgatatttgtgtaaaatgtctTGACAATTAAAAACCCTTTTTACTCTTGACATCCAATATTACGTTTAGAATGGATGCACCCCACAGTGTTCACACAGTTTTATAACCTTGGGCTATAGGCAGTGTAATCTCAGTCATTATGGGACCCAGCTAGGACTCTGCTCATGCAATGCTATTCTGTTTACAGGTATGGGCTGCCAGTGAACTTTCAGGCCATGCTGCTGCAGCCCAATAAGAAGACCATGAAGAAGCTGAGGGAGGTGCTGTATGATCTCTACAAACACCTAGACAGCAGTGCAGCCGCCATCATTGATG

Function

GO:

id name namespace
GO:0033180 proton-transporting V-type ATPase, V1 domain cellular_component
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002694 False 432 mRNA 0.47 7 26613476 26664767
TU157043 True 480 lncRNA 0.39 1 26654210 26654689

Neighbor

gene id symbol gene type direction distance location
AMCG00002693 NA coding downstream 4724 26596131 ~ 26608752 (-)
AMCG00002686 ubr5,LOC102786672 coding downstream 161002 26395882 ~ 26452474 (-)
AMCG00002685 rrm2b,LOC107556385,LOC108425040,LOC107394698,LOC106956493 coding downstream 222494 26382511 ~ 26390982 (-)
AMCG00002690 NA coding downstream 237580 26363962 ~ 26375896 (-)
AMCG00002687 laptm4b,LOC107702097,LOC107724295,LOC107394696,LOC107565197,LOC105907721 coding downstream 275319 26322898 ~ 26338157 (-)
AMCG00002708 NA coding upstream 157198 26821965 ~ 26831030 (-)
AMCG00002707 kiaa0196 coding upstream 398994 27063761 ~ 27099867 (-)
AMCG00002704 kiaa0196 coding upstream 449438 27114205 ~ 27119264 (-)
AMCG00002709 esrp1,LOC107593677 coding upstream 476358 27141125 ~ 27141425 (-)
AMCG00002706 NA coding upstream 575569 27240336 ~ 27244422 (-)
G125269 NA non-coding downstream 115026 26495949 ~ 26498450 (-)
G125200 NA non-coding downstream 370945 26242254 ~ 26242531 (-)
G125178 NA non-coding downstream 407605 26204892 ~ 26205871 (-)
G125160 NA non-coding downstream 483014 26126554 ~ 26130462 (-)
G125075 NA non-coding downstream 1001179 25610117 ~ 25612297 (-)
G125361 fam91a1,LOC106570778,LOC106589122,LOC107702086,LOC107724353 non-coding upstream 248940 26913707 ~ 26915965 (-)
G125376 NA non-coding upstream 312917 26977684 ~ 26977920 (-)
G125415 NA non-coding upstream 467119 27131886 ~ 27197333 (-)
G125473 NA non-coding upstream 700695 27365462 ~ 27365663 (-)
G125474 NA non-coding upstream 703841 27368608 ~ 27368869 (-)
AMCG00002688 NA other downstream 307553 26283340 ~ 26305923 (-)
AMCG00002682 NA other downstream 333855 26267052 ~ 26279621 (-)
G124848 NA other downstream 2273910 24291787 ~ 24339566 (-)
G124829 NA other downstream 2351653 24261565 ~ 24261823 (-)
G124719 NA other downstream 3317361 23085994 ~ 23296115 (-)
AMCG00002705 klhl38a,LOC103030765,LOC106570780,LOC103376378,LOC108424967,LOC107724354,LOC107565193,LOC107702087,LOC104967054 other upstream 190126 26854893 ~ 26875246 (-)

Expression


Co-expression Network