G122548


Basic Information

Item Value
gene id G122548
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11714409 ~ 11716145 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU153665
ACCCCCTCCCCATATCAATCATCCCCAGGAAAGATCAAAGCTGTGTCAATAAggacactgtcacacactcacactcgcacacacacacagcagtcgcacacacgcatacacacacacggcGCTGTAAACAATGCACTGCTGAAGTGTTTCTCCTTGAAAAAAcgaaaccaaaaaacaaattggtctctctctcctctgcacTCCCTCTCCTGCCTCCCCTTCTCTAGTACTCGGAGTCCAGAAaaagagtgacagagagagagaaagagacaagcTTCCCTTGGCACCCTGTCCTCATCCCTTCTTTTCCACCAGGccccttttctcttttctgaaggacaggggtgggggggggaggaagagagtgaGGAGTCATCCAAccttttctcttcctcctctccaccATCTTTGACCCTCTGGTCTCCTCTCCTCTCGATGGGGGTTTGTGGGTGTgcagggtgtggggggggggggtggaggaagCTTGAAAGCGTCACCAGCGTTTCAGTTcatttttcatagttttaaaaatgtctgtttaaattCACTCCATTTTATTTAAGGTATGCTTAAAAGGGCAAAAGGGTGGGAGGGGGGATCAGTAAACCACAATATAGGTCTTCCATTCAAAccctccccttccccctgcttctctctctctctctctccccatctctctctccatgtgtgTAGTGAGGCAGTGAGTGTGCCTCGGTCAAGTCTGCCTGTCCATCTCgtccttcctctccctccctccaggcCTCTTGGCGCTATTATCTCTTGGCGCGGACGAAGTACAAGGCGTTGGTCTTGGGGTAGTACTTCACATTCTGCTTCTTGTCCATCAGGCCGCCAAAGATGATGAGCTCGCCCCGGCCCTGGACCACTGTGTGCAGGCTGGTCTCAGGGGGGCCCACCACTGCTGCCCCCCCGCCACCTCCTCCGCCTCCTGCCACCGAGGAGCTGCCCCCTCCTCCGCTGAACACCTTCCAGCTCACCATGCAGGCCTGCTTGGCGTGAGAAATGTCCAGGATGTACATCTGCATGGGCTTGCAATTGAGGCTCTGGTACAGCGGCTTGCCCACATTCAGGGACTGGGGCGGGTGGTGGCCCAGGCGCCGTGCAATAGCCGGGAGAGAGTGCCCGTCAGCGGTGGAGGAGGCCGACGAGGAGGAGCCAGAGGCGGCCGCAGGGGGAGGCGGGGCGGCTGGGAGAGGTGGGCTCAGAGCCGTGGCCACACCCCCGCCTTGAGAAAAAGAGGaggtggaagaggaggaggagagcgcTTTGACAGCCTCCAGGCCTCGCCGCAGAGCCCCGGGAGACACGGCGCCAGGGGGGGTGCGCACGGCGGGGGCGAGGAGCGGCGGGGGGGGCGTGTGCAGACCGTTGCTGTGCTCGGGGGCTGGGGAGTCCGGGGGGGGCGGCGGCTTGGGGTCCCAACCATAGTCCAGGGCCCGCAagtgggagtgggggtgggCGTGCAGGGGGTCCCCAGCGGGTGTCCCAGGGGAGCTGGCCTGGGCAGGGCTGCCCccggtggaggaggaggagccatTGAGGACGGGGGGGCTGTCGGCTCCACGCGAGGGGGAGGGACTGCCCTCTCGCGCACTCCCCGCCCTTGGGCCGCGTGGCCGCAGTGTGCCCCAGCGCCCATTCACGCAGGGTGCCTCCTCGCCCCCCCGGACCGGAGACTGGGGCCGCTCCCGGGGCTCGGGAGCCAGGGAGGGGGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153665 True 1737 lncRNA 0.62 1 11714409 11716145

Neighbor

gene id symbol gene type direction distance location
AMCG00002335 NA coding downstream 3098 11708258 ~ 11711311 (-)
AMCG00002334 NA coding downstream 8714 11703336 ~ 11705695 (-)
AMCG00002333 NA coding downstream 13732 11694337 ~ 11700677 (-)
AMCG00002326 NA coding downstream 83500 11629149 ~ 11630909 (-)
AMCG00002328 NA coding downstream 93750 11612396 ~ 11620659 (-)
AMCG00002336 fbxo42,LOC107573139,LOC106565130 coding upstream 4071 11720216 ~ 11725951 (-)
AMCG00002338 NA coding upstream 51139 11767284 ~ 11772145 (-)
AMCG00002337 NA coding upstream 57451 11773596 ~ 11783638 (-)
AMCG00002348 LOC106928075,LOC100705239,LOC102211954,LOC103467007,LOC107092894,LOC101478036,LOC106947826,LOC105927147,LOC103150475 coding upstream 71357 11787502 ~ 11790736 (-)
AMCG00002346 NA coding upstream 84296 11800441 ~ 11803744 (-)
G122530 NA non-coding downstream 85974 11601972 ~ 11628435 (-)
G122438 NA non-coding downstream 264618 11449566 ~ 11449791 (-)
G122432 NA non-coding downstream 304823 11407524 ~ 11409586 (-)
G122376 NA non-coding downstream 439882 11267564 ~ 11274527 (-)
G122319 NA non-coding downstream 900533 10812186 ~ 10813876 (-)
G122551 NA non-coding upstream 2385 11718530 ~ 11718969 (-)
G122632 NA non-coding upstream 128247 11844392 ~ 11845671 (-)
G122633 NA non-coding upstream 130936 11847081 ~ 11848192 (-)
G122636 NA non-coding upstream 141246 11857391 ~ 11859325 (-)
G122621 NA non-coding upstream 146758 11862903 ~ 11864056 (-)
AMCG00002327 spen,LOC108414948,LOC106565133,LOC107591084,LOC107737540 other downstream 29320 11647911 ~ 11685089 (-)
AMCG00002317 plekhm2 other downstream 186491 11514000 ~ 11527918 (-)
AMCG00002301 NA other downstream 867208 10837804 ~ 10847201 (-)
AMCG00002288 NA other downstream 1434425 10269889 ~ 10279984 (-)
AMCG00002279 NA other downstream 1861334 9836918 ~ 9853075 (-)
G122597 NA other upstream 15472 11731617 ~ 11734324 (-)
AMCG00002350 tmem240a,tmem240,LOC107687438,LOC108275582,LOC105898995,LOC107593924,LOC107673083 other upstream 132325 11848470 ~ 11854891 (-)
AMCG00002351 NA other upstream 153462 11869607 ~ 11872862 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other upstream 279683 11995828 ~ 12006352 (-)
G122862 NA other upstream 1312052 13028197 ~ 13029406 (-)

Expression


Co-expression Network