G123489


Basic Information

Item Value
gene id G123489
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 16481568 ~ 16483051 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU154834
CTCAAAACAGTCAATGAGgccaaatttaaatacataaacaagttTTAGATGTATATACTGTCTTCCTTAAATTTCTGAATACTCCCGCTGATATTACTATGAACAGtattaaacacaataacaaacGTTTACATGTTAAAGACGAACACTGTTATGTGTGTCACCGCTTGAAATctttttgctgtgtttgtaagtgtgaatgtgtgttgtaGGACACCAGTGGAAGGTAGTTTAAACTGAGAAACAAAAGTACTGGTCCGGCCATCTAGGTCaaataaagacttaaaaaaacaacaacaacaacaacaacaacaaattaaagaaaacaaaacctctaTCTCCTCAGCTGCTTTAGGGTGTCACTTCATCTTTGGTATAAAATAGGCCATCCATAGGCTGCATTTGATCGACAACTATGAAAGACTACAGAAATTGTCAACAATTTCTTCTATCTATTGCTTTTGCACTAATTGGTTTAACCATAAGCTCCTATCTATTTAGTTTTGCActgctagtttttttttttttttgcaatgtgaCAAGCAAAGCGGACTAAAAACGTCTTAAAGCTCATAAAAAAGGTAGCAGATAAAAAGCACTAATGCAGTCAACAGCGATTTCGccatgtaaaattaaaaaacaaacaaaaaatatctgcattttgcaacaatttgcattttcctaTAATGcagtaattcatttttttctcatacTGAAAATCGCTTATAGCCCCAGGTTTTATTCTTCCCATTCTCCACTAAGACAGAAATTAAGTCTCAGCCTCTTAGAACTTTAAACATTGTCAGTTGCCACTGTTTCATAATTAAGAAAGTTTTcttcaaaagaagaaaacaatcttTTCCATTAAATCTGTACAGCTTATTTAATAGTTTTCCTTTTCCCAATTCAACTCATATCTTGCACCATTCAATTGGTCCAAGCGACTAGTtcattcagtcttttttttccgTAACAAGACGCTCGACTGTTCACTTTGGAAAAGTCTCTAACGTTGTTAAAATTAAGGCAATAAAGATTCAAGAAAAAACCTTGCTAAAGTTctctaaaaaaactaaaaatttaacatgagaaattaaaagaaagaaaagaaagagtaGCTTAATATCTGAGGAAGAcgaccatttttttttttatttccaaacttGCTTCCTCTCAATTTCAAAAATCTCACCATTGCTTAAACCTACCTGCACATTcaaaggttttttcttttttttttcctttgttatttaaattcaaGAAATTTCATGATGAAAAAATTCAAGCCTCTTTGCTGGGCGACATTAAACAATACTGTCAGGATACATGACTGAACCTCTTTCTGCACAGCATGTCGCAATACTTTCTCCACTGGGCAAGGTAGGAAATCAAAAAGTTTCTTTTGGTGCCTGTGCAATCTGGAAGCAAACTCCCTCCTCAGTGCAGTTTCCCTGTTTCAAGGCAATGCTGTCAGAGGAACATTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU154834 True 1484 lncRNA 0.34 1 16481568 16483051

Neighbor

gene id symbol gene type direction distance location
AMCG00002477 NA coding downstream 327003 16129440 ~ 16154565 (-)
AMCG00002475 eomes,LOC105012780 coding downstream 436478 16038401 ~ 16045090 (-)
AMCG00002474 NA coding downstream 492533 15951233 ~ 15989035 (-)
AMCG00002473 LOC107666842,LOC103361314,LOC100691736,LOC102304281,LOC102192906 coding downstream 531546 15942106 ~ 15950022 (-)
AMCG00002472 NA coding downstream 558441 15838879 ~ 15923127 (-)
AMCG00002481 NA coding upstream 85285 16568336 ~ 16582900 (-)
AMCG00002487 NA coding upstream 175847 16658898 ~ 16672579 (-)
AMCG00002488 NA coding upstream 206785 16689836 ~ 16734523 (-)
AMCG00002486 NA coding upstream 269497 16752548 ~ 16753496 (-)
AMCG00002491 zdhhc3,LOC103144443 coding upstream 309505 16792556 ~ 16813272 (-)
G123488 NA non-coding downstream 1275 16480029 ~ 16480293 (-)
G123452 NA non-coding downstream 354163 16124282 ~ 16127405 (-)
G123405 NA non-coding downstream 686396 15790605 ~ 15795172 (-)
G123401 NA non-coding downstream 758431 15722933 ~ 15723137 (-)
G123385 NA non-coding downstream 792227 15687455 ~ 15689341 (-)
G123524 stt3b,LOC108412618 non-coding upstream 165356 16648407 ~ 16651454 (-)
G123527 NA non-coding upstream 170448 16653499 ~ 16654863 (-)
G123637 NA non-coding upstream 497780 16980831 ~ 16982646 (-)
G123642 NA non-coding upstream 512078 16995129 ~ 17050056 (-)
G123646 NA non-coding upstream 592261 17075312 ~ 17075549 (-)
G123263 NA other downstream 1535257 14941260 ~ 14946311 (-)
AMCG00002421 sec61b,LOC102796100 other downstream 2827321 13649227 ~ 13654247 (-)
G122862 NA other downstream 3452162 13028197 ~ 13029406 (-)
AMCG00002368 rbm24b,rbm24,rbm24a,LOC106596654,LOC107601977,LOC106517771,LOC105905339 other downstream 4475216 11995828 ~ 12006352 (-)
AMCG00002351 NA other downstream 4608706 11869607 ~ 11872862 (-)
G123585 NA other upstream 353105 16836156 ~ 16839722 (-)
AMCG00002503 NA other upstream 475111 16958162 ~ 16974301 (-)
AMCG00002524 NA other upstream 1206957 17690008 ~ 17706289 (-)
G123829 NA other upstream 1439401 17922452 ~ 17989465 (-)
AMCG00002533 ulk4,LOC107704090 other upstream 1450413 17933464 ~ 18041573 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G135641 NA non-coding NC_053124.1 CM020921.1 22653775 ~ 22661054 (-)
mexican tetra (Astyanax mexicanus) G284887 NA non-coding NW_019172602.1 APWO02002200.1 513647 ~ 571090 (-)