AMCG00005139 (slc25a24,LOC108439838)


Basic Information

Item Value
gene id AMCG00005139
gene name slc25a24,LOC108439838
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 16862978 ~ 16875255 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005139
TTACAACAAAGGGGTCTCGTTGTAAACGTGACCTAAATTAACATATCAGGAGAAGCCAAAGCCCAAATCTAGAGAGTGCTCGTATCACAAATGCATCTTGTACATTAGGATAGAGCCCATATAAACTCTTGAGTCTGagatatctatatatgtgtgtgcatgtatttgtaagcatgcatgtgtgtatgcatgcatgaaACACAAAGCAAGTTGTGTATTACTCATAGTTAGGGTGTGGTACAACTCCACtgcagtttgaaaaaaataaaaatctccatAGCAGAAGTGCTGCAAAGAAGTCCCACCCATTTTTTCACGGTCCAGGGGCCGAAGTTTCTTTAAGATAAAGGCATGCAAATTTGGGGGATAATACTGCTCTGTATTGAACTGACAGGTGACGTTTATAGCAGCTATTAATGATCTCAGTTACCAAGGCTCGGATATAGGAAGTCAGACGCTTCCTGGAGAAATCCATCGATGCACCGAAAGCTACAGACGCATCCCATCTGCAGTAGCTCCTTCCCCGCCGTCTGCCTTCACATCTTCCGCCAGAGAGCACCGCGCCAGGGCTGCACAACCATCTTTCTCCCCCCTGTGACTCGTCTTGACTCCCGGTGAAGATGTACCAGCTGGCCAGGAGGTTCGTGTTCACCGACTCGCAGTGCTTCGACGCCGCGGAGAGGAAGAAATACGAGGACCTGTTTGAGAAGCTGGACACCAACAAAGATGGGAAGGTGGACGTCACGGAGCTCAGAGAGGGCCTGGCCAGCATGGGCCTCACGTTTGGCCAGGGGGCCGCACAGAAAATAGTTTCATCTGGGGACAGAGATAAAGATGGGGGACTAGACTTCCTCGAGTTTACCAAATATCTCAGAGAACATGAAAAGAAGCTGCTACTGACTTTCAAGAGCTTGGACAAAAATAATGATGGATGTATCGATGCCTCTGAGATTAAGAGCTCTCTTGAAAACCTTGGGATGGCAATAAGTGAAGAGGAGGTGCAGAAGGTTCTTAAAAGCATAGACGCAGATGGGACCATGACAGTGGACTGGAACGAGTGGCGAGAGCACTTTCTCCTCAACCCTGCCACTAACATCCAGGAGATCATCCGGTACTGGAAACACTCCTCGGTGAGTGTGTAGCGATGAGCATCAGACCAGTCCTCTGGGGCCAACCTCCTTCCTCTAGCAGCATGGACGCTGGCACACAAATGGGTATTGGTCCTGTCACTCAAAGGACAAGCTGCCATTGGATTTCCACAGGGCTGTTGATCCTGCTGTGGATTACGTCAGTCTTTTGTCTGTCCTGACTAGGTATTGCCTTATAGAAATAATTTGCTCAACTGGATTAAAAAGTAGACTAATTTTAGTAATcctcattatttaatttgaacaggcTGTAACCCACGAAACAATAtgacatgtttctgtttttcgTATCCTAGTATCGCGTGGAAGGTGTCATAATACGTTGCTTGGCTGAGTTGAGCTCTCTGCAAGTGTTATGTAAAAATGAAGTGCCAGGACAAGGTCAGATACTCAGATGCGGTCCGCTAAGCTGCTTGGCTTTCCAATTATAACTTGCAGGGAAGAATAGGGGCGGTCTGCCCTGTAATGAAGCAGTGCGTTACTTTTGAGATGATGAACATAATTGGTCATAGCCGGTCTCGTACAACTGTCTTCAAAATGTGAATgcaatggtttaaaattattgtACAGTTGGCCTAGTGTTTAACAATTGTGCAACCACACGGACAgttttatgcaaatgttttaggctgCCCTCACTGGGCTTTTAGATTGAATGTCCTATTTTCTTCTTCAAGGTAACCATTGAGTGGTTATCCGTTCACACGCTCGATTGGAAGTCACGGTAAAAGCACACGCCTTATCCGTCAAACTGTACTCAGGCTATGTTTATGTTCTGAAAGCAAAGGACAGCTAACCTCCACTTACACCGCAGGTTACAATTGCCCTAATAGGGAGCTACAaacatttcaggtattttttaGTATGGAAATACTCGGTCACAACATATAATTCAGATGGTTCTCCATGACAGTGGGGCTGAGAAGATAAATCTGGCTAATCTGATCTGCGATCTCCGGGAGGGATTAGTGTTTAAGATGCTATGCCGTGCTCAGGGCTCGGGGGGTGAAGGTGAGACTCAGCCATGAGAGAGGACAGCCGTGACACAGCGGAGCGTTAGGGTAGCCCAGTGCGTTTGATTCTGCGTTTGGGGCTGAACAGACATGGCTGTCCTGCAGCTGCAGAAAGGGCAGTGGTTCTTCATTGACTTTGAGGACGATGGGGCCATCTATGAAGTGGTAGGTTTTCAGAGGCAGACAGTGAGAACAAGCCTCAGTTATTTTTCAACCGGCCACTGATGTTGTGATACaggtgtatttgtattatgttgatAACTGATTACATCAAAAGAGTTTATTGCATGTGTCCAGAAAGTGTATGTCAAATTTAAACATGCCTTTTGGCCATTATAACCTGGAAGTTGTTCTGCAGAACTGCATAAGAACAATAACTAATACTTCTTACATCTTTACACATAAGCCTAGTCTTTACTTTTTCATTCTCATTCTCTAAGTGCTTATATCTAGATTGAAAGTAAAGAAAGGGATTGTCTtttgatatatatgtgtgtttttatcaaGTTTTGTCCATATTTAAATCATCTGAAATTGAAactgattaatttgtttaaatctttTTCAGAAGCGACAGCATAACCTTTGAAGAGTGTAAGACAGCCTacttcatatattaaaaaacacaaatttgtgGATGTAGACCAAACTATAAATGTATAGGACTGTAGACACTCATTTTAAAAGTAGTTCCTAcgaattgttaaaaataatcaagcataaaacagtgcagttttttttcttaacccaCGCAGGTTCTGGATATTGGAGACAGTATAGCCATCCCTGATGAGTtcacagaggaggagaagaCCACGGGGATATGGTGGAGACAGCTGATGGCGGGAGCGATGGCCGGAGCTGTCTCTCGAACGGGTACAGCTCCTCTGGACAGAATGAAAGTCTTCATGCAGGTTCACTCATCCAAGACTAATAAAATAGGCCTCGTCAGCGGCTTCAAGCAGATGATAAAAGAAGGGGGGGTGACGTCTCTGTGGAGAGGGAATGGCGTGAACGTCATTAAGATTGCACCAGAGACGGCCATAAAGTTCATGGCCTATGAGCAGTACAAAAAACTAATTTCGTCAGAGGGAGGGAAGGTAAAGACCCATGAAAGGTTTATCGCTGGGTCTCTTGCCGGGGCTACAGCACAGACAATCATCTATCCCATGGAGGTGATGAAAACCAGGCTCACGCTGCGGAAGACGGGCCAGTACTCTGGGATGTTTGACTGTGCCAAGAAGATTATGAAGAAGGAAGGTGTGAAAGCCTTCTACAAAGGCTACGTCCCCAACATTATTGGCATCATCCCTTACGCAGGCATCGATCTGGCTATTTATGAGAGTTTGAAGAATGCCTGGTTGTCCCATTATGCCATCGATTCTGCAAACCCtggtttatttgttctgttggGCTGTGGGACCATTTCTAGCACTTGCGGACAACTTGCTAGTTACCCTCTTGCTCTGATTAGGACCCGGATGCAAGCACAAGcatCCATGGAAGGATCAGAGCAGCTCTCCATGGTTGGCTTAACcaagaaaattattaaaaatgatggCTTCTTTGGACTCTACAGAGGAATTCTCCCTAACTTTATGAAGGTCATTCCTGCTGTAAGCATTAGCTATGTGGTCTATGAATACATGAAGAGCGGTTTAGGAATTTCCAAATAAGAAAATGGTGCCAAAGTTTGTGCATTCCAAACATCCTGTACGTCCCTGTGAGTTCCTGAAGTAAAGGAACGATTCAGTTTCAATTGGTTTAATACTCTGCACTGGACAGAAAATCAAGTATAGCCTTCTCAAAGGACCCCCTGGttgatgtatattttgtttggcCAAAGGTGAGAAACATAACAAATTAGAATAATTTGAATGTTACATGTTCTTGAGATGCTTGTTTGTTAAGAAAGAAAACTTCCCTAAAGTTCAGGTGTTCAAATGAAATGTCTGTCTTTGGAAAACTGCATTCTGTTGAAAATGCTTCAATCCTACACAAACTGGTTGACTTCTACCTCCAGGAAGGATTCTGCAAACCAGCATCTCAAACAGCACTGCTATATGGAAAAGAGCCTTAAATAGGGGatgtttaaacataaatattgtataagACTAGAATGTGCCTTTGTTTTATTGCCTTGACCCAAGTTCTGCTAAAGTGTTTTCGTTCTTTTTccatggacatttattttttaatgtacttttgtttgcatgttCAGTATTCTGCGGTTTATATCcttgaattttttattttatttttctttgaggTGCTTCCAAGTTTATCACTTACATTAATACAAGTGACAAACATCCACTATTCTTAAATAGCCAAATATTGAttaggaaaaataatatattcagttACAGCTTAAGTTTGTGGTCTCAGATTCTTTaacaatcaaaagaaaatctCCCAACTAAAGTAACAACACGTTTATATCGGAATCAGTGTGTTGGATTTGTCATGTCCTTGTTTGAAACGTGATCATCTTTTAAGAGTTACCATAAGCAATAATGTGTTGGTCTTGGTTAGCTAAGACAAGATGCCTTAATGTCTTAATGCAATTACTGTCATGTGTTTAGAGGATTTCACAGGTACACATCTGGACTGacatctgaaataaatgaattattttaaaatcagtgaAGATGCATTTGCATCGGATAAATGCTtgga

Function

symbol description
slc25a24 Predicted to enable ATP transmembrane transporter activity and calcium ion binding activity. Predicted to be involved in several processes, including ATP transport; cellular response to calcium ion; and cellular response to oxidative stress. Predicted to act upstream of or within transmembrane transport. Predicted to be located in mitochondrion. Predicted to be integral component of membrane. Is expressed in several structures, including Kupffer's vesicle; anterior axial hypoblast; hatching gland; periderm; and polster. Orthologous to human SLC25A24 (solute carrier family 25 member 24).

NR:

description
PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-1

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K14684 SLC25A23S; solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005139 True 4840 mRNA 0.42 9 16862978 16875255

Neighbor

gene id symbol gene type direction distance location
AMCG00005143 NA coding downstream 12916 16849802 ~ 16850062 (-)
AMCG00005142 NA coding downstream 48324 16813145 ~ 16814654 (-)
AMCG00005141 vav3 coding downstream 53320 16806243 ~ 16809658 (-)
AMCG00005140 NA coding downstream 63292 16782256 ~ 16799686 (-)
AMCG00005136 NA coding downstream 87020 16773667 ~ 16775958 (-)
AMCG00005148 NA coding upstream 28645 16903900 ~ 16907830 (-)
AMCG00005152 NA coding upstream 40002 16915257 ~ 16920464 (-)
AMCG00005151 NA coding upstream 45214 16920469 ~ 16944176 (-)
AMCG00005150 NA coding upstream 79620 16954875 ~ 16960869 (-)
AMCG00005149 NA coding upstream 100328 16975583 ~ 16980358 (-)
G145680 LOC101077364,LOC107383562,LOC104957225 non-coding downstream 487561 16374662 ~ 16375417 (-)
G145441 NA non-coding downstream 1596030 15261347 ~ 15266948 (-)
G145436 NA non-coding downstream 1605314 15255889 ~ 15257664 (-)
G145434 NA non-coding downstream 1608090 15253513 ~ 15254888 (-)
G145401 NA non-coding downstream 1713386 15145798 ~ 15149592 (-)
G145760 NA non-coding upstream 88948 16964203 ~ 16965074 (-)
G145995 NA non-coding upstream 1149510 18024765 ~ 18025674 (-)
G146022 NA non-coding upstream 1422592 18297847 ~ 18298103 (-)
G146023 NA non-coding upstream 1476612 18351867 ~ 18352132 (-)
G146189 NA non-coding upstream 2208740 19083995 ~ 19086041 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other downstream 884123 15958704 ~ 15978855 (-)
AMCG00005111 NA other downstream 1327833 15503082 ~ 15535145 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other downstream 1893736 14964414 ~ 14969242 (-)
G145046 NA other downstream 3526232 13336209 ~ 13336746 (-)
AMCG00005022 NA other downstream 4514650 12344671 ~ 12348328 (-)
AMCG00005158 NA other upstream 667891 17543146 ~ 17546332 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other upstream 1866629 18741884 ~ 18764298 (-)
AMCG00005214 NA other upstream 2137822 19013077 ~ 19024461 (-)
G146313 NA other upstream 2694804 19570059 ~ 19573318 (-)
AMCG00005240 NA other upstream 2882977 19758232 ~ 19761446 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000325_09999928_10011153 SLC25A24 coding CI01000325 null 9999191 ~ 10011153 (-)