AMCG00005152


Basic Information

Item Value
gene id AMCG00005152
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 16915257 ~ 16920464 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005152
ATGAACTGTGCGACCCACAGGGCCCTGGTCTCGTGGGAGCCCAGTGCCGGGTCGGTGTGGTACACCGTGTCGGCCAGCAACCCCCGTGGCCGCGCTTCGTCTTGTGAGAGCCGAAGTACATCTTGTGAGCTCCCCGACCTGGCCTGCGGGGTGCTTTACAGTGTGCAGGTGATGGCTTCAGACTACAACTGTTCAAGTCTCCCCAGTCAAACTATTAACGTCCAAACAGTCCCCTGTACCCCTCTGATCATAGAAGCCCATCAGGACTGTTACACCAACACGGCTTTTAAATGGTCCTACTCTGTGACCTGGGAGCCCAGTGATGGGGCCACATCGTACACCGGCATTGCTCAGAGCAACGGGGGGTTCTCCTCCCAATGCAAAACCAACCTCACAACATGCCACTTCACCGACTTACTCTGCGGCTTGTCCTACAGTATAACCGTTACTGCCAAAGATAACACGTGTACAAGTTTTGAAAGCAATATCATGCAACTGAATACAGttcCCTGCGCGCCTCAGAATCTCACGACACAGTTAGAGTGCATCAACAACTCGGCCCTGGTGTTGTGGGAGCACGGAGAGGGCGTGGCTTCCTATGATGTTGTGGCTGTGGCCCCGGGTGGGCACAGGAAACACTGTAACACAAACTACAGCAGCTGTGAGCTGACAGGTTTAAACTGTGGGGAGATGTACAACCTGACAGTGACCTCGCTGGATGGACTGTGCAACAACGTGCTCGACGCCTCGTTTCTCCATTCAGCCCCGTGCCCTCCCCAGAATGTGGACGTTAACATGCTGTGTGATTCGGGGACATTGGAAGTCGGCTGGGAATCCACCCTGGGGGCTGATTTCTACATAGCGCAGGCTGTGGCCAAGAATGGCACGCAGTTTTCCTGCCGCACAGCCGGTTCCAGCTGCAATATAAGAAACCTAACGTGCGGACTTGTTTTGAGCGTTCAAGTCACAACCTTCTGGCATGCCTGTGGTAGTGCTCCCAGTGAAGCTGTTCTGATTTCAACAGCACCCTGTATTCCCCAACACTTGTTTGGTATTCTGGACTGTGTGACCAACTCAGCTTGGGTATCCTGGGACCACAGCACCGGGGCTCAGTCTTACACTGTGACGGCACAGGGCAAGGGAGGTCTCAGCTCCAACTGCAGTACCTCTAACACTACCTGCAATGTGCCGGATTTGAGCTGCGGGGTCCTCTACACGTTCTTTGTCACGGCCTTGGACCAGAACTGCAACAGTTCAAAGAGCAAACCTTTCGAAATCACAACAGGTACCTTTGCGAAAGTCAGATTTGGTAAAGATGATGGTTATGCAATACCACCCTGTGCCCTCACCACCATCACGGCTTTAAAACACTGCGACCGCAACACACTGCAAGTCCTGTGGGACTGGACGGATGCCTCTCAGATGTACATTGCAACGGCAGAAGGGAGTGACAGAAGCATGCTTTCTTGCAACAGCACCAGAGGAACCTGTGAACTGACCAACATACAGTGCGGCCTGCAGTACATCATTATTGTTGCGGCCTCTTCCGACAAGTGTAGCAGTCTGAGGAGCCCTCCATATAAAATCAATTCAGCCCCCTGTGCACCTCAAAATGTTAGTACTCACGCACAGTGCGAGTCCCGTGAAGTCATCGTGTCCTGGAATCCCTCATTCGGAGCCGAGTCGTATGTCATGAATGCCACTGGAAACGATGGCGATACACAATCCTGTAACACAACACAGACTTCCTGTACTCTCAGACAGATGCAGTGTGGCCGGTCCTACTCAGTCTCAGTGACGGCTGCAGATACTGAGTGCGTCAGCCCACCAAGCCCCGCCATGATGTTTAATACAGATCCCCTGTCCTGTGAGACCCAGGAGACTCGCTGCACTATAAGAGGACTGGATTGTGGCAGCATGTACAACTTTACAGTGCAAGCTTCTGATGGCATCTGTAACAGCTCAAACAGTGAGCTGGTACACAAAGGAGCAGCTCCCTGCCCACCGGAGATGGTGAAGACCAGCTTGATGCCCATGTACAGCATGGTCCAGGAGGTGAAGGTGACGTGGTCTGAGGTGAACTGTAGCGAGGTGCAGTATGAAGTTCTAATGAACGGGCAGGTTGAGAATGACGAACTGGGATACTTCCAGATGACTTCCTACTGGACATACGTCACGTTCTTCTTCATCCCTGTACCCTGCAGCTCCACTTTCAACCTGACCCTGAGGTCAAGCAACAAAGCAGGGGTCAGCAGTCCCACTAAAGTGGTCCAGGGACTTACAGCTCCCTGTGCCCCAGTGGGAGCTCTATACAATGGGAACAATGTTTCAGCAGTCATTTCATGGAATGCAACAGTTCATGCTACAGAATATGTAGTGTATAGTGTTTTCAATGCAAGCAGAACAGAGAAATGCAGAACACCACAACTTTCATGTACAgtagaaaacacagagagaagaaCCCTTCGAATCACTGCTCTGAACTCTGCTGGAGAGAGTGAACTTGCCACAGTCATTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005152 True 2520 mRNA 0.52 10 16915257 16920464

Neighbor

gene id symbol gene type direction distance location
AMCG00005148 NA coding downstream 7427 16903900 ~ 16907830 (-)
AMCG00005139 slc25a24,LOC108439838 coding downstream 40002 16862978 ~ 16875255 (-)
AMCG00005143 NA coding downstream 65195 16849802 ~ 16850062 (-)
AMCG00005142 NA coding downstream 100603 16813145 ~ 16814654 (-)
AMCG00005141 vav3 coding downstream 105599 16806243 ~ 16809658 (-)
AMCG00005151 NA coding upstream 5 16920469 ~ 16944176 (-)
AMCG00005150 NA coding upstream 34411 16954875 ~ 16960869 (-)
AMCG00005149 NA coding upstream 55119 16975583 ~ 16980358 (-)
AMCG00005165 NA coding upstream 84846 17005310 ~ 17033426 (-)
AMCG00005164 wdr47,LOC102290984 coding upstream 127581 17048045 ~ 17062557 (-)
G145680 LOC101077364,LOC107383562,LOC104957225 non-coding downstream 539840 16374662 ~ 16375417 (-)
G145441 NA non-coding downstream 1648309 15261347 ~ 15266948 (-)
G145436 NA non-coding downstream 1657593 15255889 ~ 15257664 (-)
G145434 NA non-coding downstream 1660369 15253513 ~ 15254888 (-)
G145401 NA non-coding downstream 1765665 15145798 ~ 15149592 (-)
G145760 NA non-coding upstream 43739 16964203 ~ 16965074 (-)
G145995 NA non-coding upstream 1104301 18024765 ~ 18025674 (-)
G146022 NA non-coding upstream 1377383 18297847 ~ 18298103 (-)
G146023 NA non-coding upstream 1431403 18351867 ~ 18352132 (-)
G146189 NA non-coding upstream 2163531 19083995 ~ 19086041 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other downstream 936402 15958704 ~ 15978855 (-)
AMCG00005111 NA other downstream 1380112 15503082 ~ 15535145 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other downstream 1946015 14964414 ~ 14969242 (-)
G145046 NA other downstream 3578511 13336209 ~ 13336746 (-)
AMCG00005022 NA other downstream 4566929 12344671 ~ 12348328 (-)
AMCG00005158 NA other upstream 622682 17543146 ~ 17546332 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other upstream 1821420 18741884 ~ 18764298 (-)
AMCG00005214 NA other upstream 2092613 19013077 ~ 19024461 (-)
G146313 NA other upstream 2649595 19570059 ~ 19573318 (-)
AMCG00005240 NA other upstream 2837768 19758232 ~ 19761446 (-)

Expression


Co-expression Network