AMCG00005170 (cdc73)


Basic Information

Item Value
gene id AMCG00005170
gene name cdc73
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 17972354 ~ 17975649 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005170
ATGAGGGAGACCTGTACTAATTACTTGCTGCTTCAAAGGTTCATGACGTCCgaggagaagaagaaacagGGCTTCCAGCGCGAGAACGAGGTCCTGCTGCAGAGGAGGAAGGACCAGATCCAGCCGGGGGGCACGACGCTCAGCGTGACTGTGCCCTACAGAGTGATAGACCAGCCCCTCAAGCTGGCGCCGCAGGACTGGGATCGTGTCGTGGCAGTCTTCGTCCAGGGTCCTGCGTGGCAGTTTAAGGGCTGGCCGTGGTTGTTGCCTGATGGGTCACCTGTTGATATTTTCGCAAAAATCCGAGCCTTTCACCTCAAATACGACGAAGCAAAGACGGATCCCAACGTGCAGAAATGGGACGTCACCGTACTGGAGCTCAGCCATCACAAGCGGCACTTGGACCGGCCCGTGTTCCTGCGCTTCTGGGAGACTCTGGACCGGTACATGGTAAAGCACAAATCCCACTTGAGATTCTGA

Function

symbol description
cdc73 Predicted to enable RNA polymerase II complex binding activity. Involved in heart development. Acts upstream of or within erythrocyte differentiation; regulation of transcription elongation from RNA polymerase II promoter; and spinal cord oligodendrocyte cell differentiation. Located in nucleus. Part of Cdc73/Paf1 complex. Human ortholog(s) of this gene implicated in hyperparathyroidism and parathyroid carcinoma. Orthologous to human CDC73 (cell division cycle 73).

NR:

description
parafibromin

GO: NA

KEGG:

id description
K15175 CDC73; parafibromin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005170 True 480 mRNA 0.56 4 17972354 17975649

Neighbor

gene id symbol gene type direction distance location
AMCG00005174 NA coding downstream 196928 17761420 ~ 17775426 (-)
AMCG00005177 NA coding downstream 227567 17735308 ~ 17744787 (-)
AMCG00005175 NA coding downstream 237130 17707718 ~ 17735224 (-)
AMCG00005176 NA coding downstream 272635 17694183 ~ 17699719 (-)
AMCG00005168 NA coding downstream 305748 17636696 ~ 17666606 (-)
AMCG00005171 NA coding upstream 6690 17982339 ~ 17983368 (-)
AMCG00005185 cdc73,LOC101483205,LOC105941386,LOC106633477 coding upstream 35879 18011528 ~ 18022231 (-)
AMCG00005184 NA coding upstream 52594 18028243 ~ 18036344 (-)
AMCG00005183 NA coding upstream 71042 18046691 ~ 18049244 (-)
AMCG00005187 NA coding upstream 88180 18063829 ~ 18066368 (-)
G145760 NA non-coding downstream 1007280 16964203 ~ 16965074 (-)
G145680 LOC101077364,LOC107383562,LOC104957225 non-coding downstream 1596937 16374662 ~ 16375417 (-)
G145441 NA non-coding downstream 2705406 15261347 ~ 15266948 (-)
G145436 NA non-coding downstream 2714690 15255889 ~ 15257664 (-)
G145434 NA non-coding downstream 2717466 15253513 ~ 15254888 (-)
G145995 NA non-coding upstream 49116 18024765 ~ 18025674 (-)
G146022 NA non-coding upstream 322198 18297847 ~ 18298103 (-)
G146023 NA non-coding upstream 376218 18351867 ~ 18352132 (-)
G146189 NA non-coding upstream 1108346 19083995 ~ 19086041 (-)
G146227 NA non-coding upstream 1242742 19218391 ~ 19219758 (-)
AMCG00005158 NA other downstream 426022 17543146 ~ 17546332 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other downstream 1993499 15958704 ~ 15978855 (-)
AMCG00005111 NA other downstream 2437209 15503082 ~ 15535145 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other downstream 3003112 14964414 ~ 14969242 (-)
G145046 NA other downstream 4635608 13336209 ~ 13336746 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other upstream 766235 18741884 ~ 18764298 (-)
AMCG00005214 NA other upstream 1037428 19013077 ~ 19024461 (-)
G146313 NA other upstream 1594410 19570059 ~ 19573318 (-)
AMCG00005240 NA other upstream 1782583 19758232 ~ 19761446 (-)
AMCG00005256 cpt2,clg17h1orf123,c20h1orf123,cunh1orf123,LOC107668114,LOC107585892,LOC107695271,LOC108441638,LOC107549124,LOC105891296,LOC105925314,LOC106930840,LOC103363808 other upstream 2023518 19999167 ~ 20023507 (-)

Expression


Co-expression Network