AMCG00005220


Basic Information

Item Value
gene id AMCG00005220
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19349572 ~ 19359668 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005220
ATGGAGCCCTGCAGTCTGGCGTCGCTGTGTGTTTTGCTGGGTCTCACGGCGAGATGGGCGGTCTCTTTGAGCTCCTATTCAGgtGCGGGGAAAGGACCCATGTTTGGAGATTATGAAGCCCAGAGACACTGGCAAGAAGTTACCTATAACCTGCCTGTCCAGGAATGGTACTTCAATACCAGTGACAACAACTTACTGTACTGGGGTCTGGACTACCCTCCTCTGACAGCCTACCACAGTCTGCTGTGCGCTCACGTGGCTCAGCGGATCAATCCAGACTGGGTCGCCCTCCACACCTCTCACGGCCACGAGAGCATCAAACACAAACTGTACATGCGAGCCACAGATATTGTGATTTACATTCCTGCCGTCATCCTGTACTGTTTATATCTGAGTGAGGGGTCTGCAAGAAAGAAGgTTGCAACCATGCTGTGCATCCTGCTCTATCCAGGACTCATTCTTATCGACTACGGACACTTTCAGTATCCTTTGCCCGTTGTGAGTGGCCTGGGCCTGGCGCTTTGGGCGGTGCTGGCTCTGGGGCTCGGCTGGGACGTGGTCGGCTCTCTGGCCTTCTGCTTGGCTCTGAACTACAAGCAAATGGAGCTCTACCACTCCCTGCCGTTCTTCTGCTTCCTCCTGGGGAAGTGTCTGAAGCAGGGCCTGGGAGCCGGGGGGTTCCTCCGGCTGCTGAAGATCGCAGTGACCGTGGTGGGCTCCTTTGCTCTCTGCTGGCTGCCCTTCCTCTCGGACCCCCAGCAGATCGTGCAAGTCCTCCGCCGTCTCTTCCCCGTGGACAGGGGGCTGTTCGAGGACAAGGTTGCCAACACGTGGTGCAGTCTGAGCATCCTGATAAAGATTAAAAACCTGCTGTCCCCCGAGACGCAGCTACGGCTCAGtttcgCAGCGACTCTCCTGTTCCTTCTACCGTCCTCCATGAAATTGTTAATGCAACCGACGTTCAGGGGATTCAAACTGGCCTTAgTCAACTGCTCCCTGGctttcttcctcttctcctttcAAGTCCATGAAAAGTCCATTCTGCTGGCTGCCATgcctgtttgtttgcttatatcCGAGCTTCCCTTCATGTCAGCCTGGTTTTTACAAGTCACAACATTCAGCATGCTGCCTCTGCTCATTAAGGATGGCCTGCTCTTGCCATACGTTGTCACATCCCTGGCCTTCCTCTTGATCAGCACCTCTCTGTTGTCCGCGCCGGGACGCACATCCGAGGACGACGTGAAGCTGAAGCCGCTGTTCCGTCTTTTCACgctctctctgctctccatGGCGGTCTTGAGTTTTATGAGTGCGGCGCTCAGCCCTCCGGCCAGGCTGCCTGATTTGTTTCCCGTGATGGTGTCTCTCGGCTCCTACGTCCACCTGCTGGGGTTTCTGATTTACTTCAACGCCGTCCACCTGATGGAGCCGGCGCCCAGCCCCAAGAgccagaagaaaacaaactga

Function

GO: NA

KEGG:

id description
K03848 ALG6; alpha-1,3-glucosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005220 True 1470 mRNA 0.55 14 19349572 19359668

Neighbor

gene id symbol gene type direction distance location
AMCG00005221 NA coding downstream 8863 19332241 ~ 19340709 (-)
AMCG00005219 pgm1,LOC106568718,LOC107731639,LOC107704513,LOC107591179,LOC107739071 coding downstream 19569 19316755 ~ 19330003 (-)
AMCG00005226 NA coding downstream 104955 19243699 ~ 19244617 (-)
AMCG00005223 NA coding downstream 122573 19219826 ~ 19226999 (-)
AMCG00005225 NA coding downstream 133433 19207738 ~ 19216139 (-)
AMCG00005222 foxd3,LOC107717135,LOC107591180,LOC107692383 coding upstream 6473 19366141 ~ 19367265 (-)
AMCG00005227 NA coding upstream 106528 19466196 ~ 19475443 (-)
AMCG00005234 NA coding upstream 128982 19488650 ~ 19492515 (-)
AMCG00005233 NA coding upstream 164144 19523812 ~ 19529682 (-)
AMCG00005228 NA coding upstream 215568 19575236 ~ 19600283 (-)
G146227 NA non-coding downstream 129814 19218391 ~ 19219758 (-)
G146189 NA non-coding downstream 263531 19083995 ~ 19086041 (-)
G146023 NA non-coding downstream 997440 18351867 ~ 18352132 (-)
G146022 NA non-coding downstream 1051469 18297847 ~ 18298103 (-)
G145995 NA non-coding downstream 1323898 18024765 ~ 18025674 (-)
G146257 NA non-coding upstream 104339 19464007 ~ 19464975 (-)
G146315 NA non-coding upstream 251098 19610766 ~ 19611005 (-)
G146322 NA non-coding upstream 344336 19704004 ~ 19732117 (-)
G146347 NA non-coding upstream 394528 19754196 ~ 19754744 (-)
G146348 NA non-coding upstream 396579 19756247 ~ 19757237 (-)
AMCG00005214 NA other downstream 325111 19013077 ~ 19024461 (-)
AMCG00005207 LOC107384419,LOC103139997,LOC107082609 other downstream 585274 18741884 ~ 18764298 (-)
AMCG00005158 NA other downstream 1803240 17543146 ~ 17546332 (-)
AMCG00005114 tmem56,LOC107712816,LOC107677262,LOC107657764,LOC106578492,LOC106570700,LOC102779182 other downstream 3370717 15958704 ~ 15978855 (-)
AMCG00005111 NA other downstream 3814427 15503082 ~ 15535145 (-)
G146313 NA other upstream 210391 19570059 ~ 19573318 (-)
AMCG00005240 NA other upstream 398564 19758232 ~ 19761446 (-)
AMCG00005256 cpt2,clg17h1orf123,c20h1orf123,cunh1orf123,LOC107668114,LOC107585892,LOC107695271,LOC108441638,LOC107549124,LOC105891296,LOC105925314,LOC106930840,LOC103363808 other upstream 639499 19999167 ~ 20023507 (-)
AMCG00005263 NA other upstream 743958 20103626 ~ 20107827 (-)
G146532 NA other upstream 914723 20274391 ~ 20279746 (-)

Expression


Co-expression Network