G144502


Basic Information

Item Value
gene id G144502
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 10956085 ~ 10958001 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU181727
CTGTTTCAATAAGAacttacattttattcacataCAGGTACAAAGACGGTAAGCTGTGGTTTCAAAACATTCCTGAAACtgtaccaaaaaacaaaaagaggataaaataaaatccacatcAAGATTTCTTCtgacagatgtttttcttttttaaatacagatttcacAGCTGTGGGAACGACCACCGCTAGAATAGATCACCCTTGCCACACTTCATTTCAACAAATTGAAGACCTTGTGTGCCACCTAGAGGGGAGGAGAGCAAAACATGTACTTAGTGTCAAGGAACATAGAAAGCATTACATGTTTCATGGTATAAGTTTCTCATCAATATTTGAATAGCTGCATTTGAAAAATCCCAATAAAAGTGAGCTCGCTCTTTAGTTTTCCTGTTGCAAAGAGCTGAATGGAGTGGGACTCTATTCATTCTTGACCATTGTCTTGTGCTGCAGGACTAAGCACTTACACAGTGGTCCCTGGCATGAAGGAAGTCAAAGAGCTCCTCTGTGCACTCCTCCTCTGTATGTGAGCGGGAGCCCACCCTGGTCTCGCAGGCCTCCAGCCGCTCACGCGTGTGGACACAGTGCTCGGTCTGCTCACACTGCTCCCGGATGGTCGTCAGGGGGTCCTGCACATCACAAACAGGGGCGACAGAGAGCTGCTACACTGCCAACACTCTCCTAACACACAATATAGGAATTCACTTGTCCCATCACAGTTTTCTCAGAAGATGCAGAACATCTAGATAAGGTAGTCTCAGAGAAGGCTAACACACGGCCGGCTTCAAAGACCATATCCTTTAACCTAGTGTCAGCTCATAGTAAGTGAGGTCTGTCAGAAACTAGACCATTGCTTTCTTCTCTTTAGTTGCATAATCTTCAAAAGTCTGAGACTCAAATACTCACCACCatatcttcctcctcctcttcctcctcctcctCCTCATCGGGCTCTCCGTTTGTGAGCATTTTCTCCTCCCTCAATACCATTGTTAGCCTTGGTTTAGTGGTTTAATGCAATAAGCCGCTTGCAAGAACGTCCCTCACTTACAGTCTCCGCTTCTGTAGGACCTTCAGGTCACAAGCCGGAAATTTGCGAAAAACCCTACCGGAAGACAGATCTACCAATCCGGTACAGAGCCTCGTTGCGTACCtgtagcgcagattcccgcagttgTTGACAGATCTGCGCAATTCCTCCAATGGGGTTGGCCAATtcctgcagctctg
>TU181728
CTGTTTCAATAAGAacttacattttattcacataCAGGTACAAAGACGGTAAGCTGTGGTTTCAAAACATTCCTGAAACtgtaccaaaaaacaaaaagaggataaaataaaatccacatcAAGATTTCTTCtgacagatgtttttcttttttaaatacagatttcacAGCTGTGGGAACGACCACCGCTAGAATAGATCACCCTTGCCACACTTCATTTCAACAAATTGAAGACCTTGTGTGCCACACAGTGGTCCCTGGCATGAAGGAAGTCAAAGAGCTCCTCTGTGCACTCCTCCTCTGTATGTGAGCGGGAGCCCACCCTGGTCTCGCAGGCCTCCAGCCGCTCACGCGTGTGGACACAGTGCTCGGTCTGCTCACACTGCTCCCGGATGGTCGTCAGGGGGTCCTGCACATCACAAACAGGGGCACCatatcttcctcctcctcttcctcctcctcctCCTCATCGGGCTCTCCGTTTGTGAGCATTTTCTCCTCCCTCAATACCATTGTTAGCCTTGGTTTAGTGGTTTAATGCAATAAGCCGCTTGCAAGAACGTCCCTCACTTACAGTCTCCGCTTCTGTAGGACCTTCAGGTCACAAGCCGGAAATTTGCGAAAAACCCTACCGGAAGACAGATCTACCAATCCGGTACAGAGCCTCGTTGCGTACCtgtagcgcagattcccgcagttgTTGACAGATCTGCGCAATTCCTCCAATGGGGTTGGCCAATtcctgcagctctg

Function

GO:

id name namespace
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0045333 cellular respiration biological_process

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04260 Cardiac muscle contraction
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU181727 True 1229 lncRNA 0.46 2 10956085 10958001
TU181728 False 752 lncRNA 0.49 4 10956085 10958001

Neighbor

gene id symbol gene type direction distance location
AMCG00004954 NA coding downstream 220 10950275 ~ 10955865 (-)
AMCG00004942 NA coding downstream 59279 10894938 ~ 10896806 (-)
AMCG00004937 NA coding downstream 832258 10114998 ~ 10123827 (-)
AMCG00004933 med8 coding downstream 906096 10045216 ~ 10049989 (-)
AMCG00004931 glul,LOC106569199,LOC106584177,LOC102795441,LOC106560331,LOC102192933 coding downstream 1108375 9842918 ~ 9847710 (-)
AMCG00004956 NA coding upstream 34684 10992685 ~ 10994644 (-)
AMCG00004955 dmbx1,dmbx1a,LOC107588924,LOC107743378,LOC107700538,LOC107684938 coding upstream 65617 11023618 ~ 11026477 (-)
AMCG00004947 NA coding upstream 146563 11104564 ~ 11105115 (-)
AMCG00004948 mknk1,LOC107602795 coding upstream 177734 11135735 ~ 11147198 (-)
AMCG00004949 mob3c,LOC106613547,LOC106574029,LOC108270829 coding upstream 193382 11151383 ~ 11163569 (-)
G144353 NA non-coding downstream 1017474 9937980 ~ 9938611 (-)
G144295 NA non-coding downstream 1205307 9744869 ~ 9750778 (-)
G144292 NA non-coding downstream 1255676 9699314 ~ 9700409 (-)
G144286 NA non-coding downstream 1271966 9683052 ~ 9684119 (-)
G144241 rpl5,LOC103464060,LOC106584167,LOC101169281,LOC107732018,LOC107566486,LOC107692344,LOC107590646,LOC103368809 non-coding downstream 1404779 9547203 ~ 9551306 (-)
G144587 NA non-coding upstream 295614 11253615 ~ 11254574 (-)
G144612 fubp1 non-coding upstream 361125 11319126 ~ 11322006 (-)
G144614 NA non-coding upstream 364582 11322583 ~ 11328481 (-)
G144657 NA non-coding upstream 541171 11499172 ~ 11501075 (-)
G144659 NA non-coding upstream 547677 11505678 ~ 11506002 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 2049491 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 2108310 8836360 ~ 8847775 (-)
G144050 selenof,LOC106598901 other downstream 2579084 8353989 ~ 8377001 (-)
G143659 NA other downstream 5172901 5736809 ~ 5783184 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 6839671 4109082 ~ 4116414 (-)
AMCG00005011 best4,LOC103396708 other upstream 1177377 12135378 ~ 12156378 (-)
AMCG00005022 NA other upstream 1386670 12344671 ~ 12348328 (-)
G145046 NA other upstream 2378208 13336209 ~ 13336746 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 4006413 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 4545081 15503082 ~ 15535145 (-)

Expression


Co-expression Network