G144614


Basic Information

Item Value
gene id G144614
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 11322583 ~ 11328481 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU181875
TTGATCTTTCATCTAAtacaagtttattattttttaacataggAACAATGTTGCACACACTTGGAACAGTTAAGTCTATAAAAGTACATTGTGGAATACACAGCACATTTCACCAGTGTTAGTTTACCTCTAATGCATGCTCCCCCTTTTGGATATTTCTCAGTATagcttctgtttttgtcttcttttctaCACCCCCAGGACTTTTCTGTTGAGAACACTTTCCTCAAAAGGAAACAGCATCtcatgcatataaataaaatatatgcagcCAAACACAAAAATGGGCAACAATTTATAAACTTGCAAGTTTAAACTAGATTTAAACATTAGACAGATTAGCCAATTAACTGCCACAATCTAAACTTTTCTACTAAACGTCATCAAAAAAGTTTCAAGtctactttaaaattaaatttctaAATTCTCATTATTGCAAACTGTTGTCAGGAATATTCAACACCTTATCTATAAGAAATGAGCACTGCCagttaaagaaaaagcatttgtaTAAGTctgcattgtttaaaataaactacattacaAGACACTGAACACCAATAGATTAATTTATGATACAAATGACATTTGTTAGCAATAAGCATTTCAGTGTAATAAACATGGATATGTACACAGACCCTAAACTGACAGAAAGAACATTGATTTCTCAATTATAACAATTCCTCAAGTTTACCTTATAACTGGAGCCCTTGATTGGTCTACGTTCACCAGTGGAATACACTCAAAGGATTCCTCCTTAGGGACAAACTATCTCGGGGCCTGATTCTATGAACTATGCTTGCAGCATCTTCAACactgtgtgtgaaaatgaaggcagcatttttaaaatgatataaacaCTATTAAAATGGGGCATCacaaagatttcaaaccaagaatacatacaaattagAAGTATATGCCATTAAATGTCTTAAACAGATTCATATATTAGGTTTAAAATACCGGCATCTCAAATTGCATGCAAAATATTATACTGATgtcaatgaaaagaaaagcaataccTATTTTATTGTGCATTATAAATCGCACTAAATAAAACTAGACTTACCATGAAACCAATGTACATAGTTAATCATGGAAATGCTGTACGTCTACAAGATCTACATTAAAGTCATACAACTGTATATTACTTATGCAATACGGAACTGGCAAATTGACAAGTTTCACAAACTCAAACCTATTCTGGAAATCAGTGCAGTCAAAAGGAAAGCAAGTGATATGTAACTACCTTAGCACAAATActttcatttcagttcaatatGCTTCAtgtgggagaaaaaataatgccATGCAATTGATTAATGTTCAGAACATATGCAATCTGAAATACATGAAGGCTGTTGCTACTCCTCTGATTCATTTCAAGATCAGACAATAGTTTGAACAAGAGTGGAATGCATCCCTATCAGCTTCACCATTTctcagaacaaaaacatttactggAACTACAAAGGCAAGTCAAGTCATTCACAGTTCAAACACTGGGTTCCTTAGGTTATGCTTACCTGTTAAACTGCAGCAGAACCTAAGGTGCAAGGTCGGGTGACACTGCAAAGATTAAATATTGCACTGTTTGCCATCAGTGAGGATTCAATCATTCATTTATGAATCAGTTCAACAGCCTCCAGTATAAAATGCTCTATCAAACAATGGCATgtcaaaaaaatgcaaatttgatCAGCAGAATAAGTCTACAATCCTAGAGAGCTTTTCTGGTAGTATCTAAGTAACTTAaacattgaaattgtttatCTATTATGCAAAACTTACTAGTGATATCTTACTGCATGAGAAAGCATTCATTACAGAttctttacatttctcagtgacATTTACTGGACCCTTGTTCACATGCTACAAATGTCATTAATCTGCTTAACGTTCAGATTCTTAAAACAGTTGCTAATTTCAATCTTGgaataattttgaattttagagtttaaattaaattgttacgTATACAACACATCTAAGGTGCAAACATTTCCTGTGAACAGAAAACCTACCAATTGCACATTCTAATATTTGCAAAGGATTTACTAAAAGCTTACACAGCACTCACATTTCAGAGTATCGAAAGGGAATGGTCCGACTGATGCATTCCTAAAAAAGCACAGTAGTCTAGAAAACAAACTACAGTACCACTTTTTAAGCAGTAACCTAAATGCACTCATTTTCCATGGTTATTGCAGCACAAGACCGTGaaaagtttacatttaaataaacttcaTAAGGCATGATGGAATACTTAAGGAAAGGAGTCACAGTAAAGGTTTAAATACACgcgttttagtattttaatacttacccagaaacagaacagagcctattttttcaataaatgcatatttcacGGCCACTGGAAAGACACTACATTTTCAGTCTCTcaaagaaatacattgaaagaGGAATTTGGTTCCATCAAAGTCGTGTACTTACAGCGTAATCTCTCCTTGAAGGAACAAATCAAGGATGATGTACAGCGAGGGCCTCCTCAGCCCTACAAATCTAGACCTACCCTGGATGAACTTTAACAGACAATGGCAAAGCAAATAGAttttgcattcatgtttttcttttaatcatagcaaatgtttttaaaaaaagccaGCAAATATACAAAGCAAACAATGGCTTTAAGACACCCAAATAGGAAGAACAAAATTCAGTACTTTTGCAaagaaattgtttctgttaatgtaaAAACACTTTTACCTGTGCTGTAAAAAAGCAGCAATTTCACTAAAATGTTCATAAAAAGTCACATTTAAGGGaacatttagtattttgtttctttttttgtttgcttaccGCTTTTCTAATCTTTCCTGTGAGGGAAAAAGTTGTTCTCTTATTATCAACAGTTCAGACTATCTCAAAGTCAGCAATCAGGTAAAGGTCATATACAGTACAACGAAAAATGCTACAGTACTAGGGCTGAAATTTTACTTGTATTGCCAACACTAACGCAGTATCATTACATACACATTAACCTATGGCTAAGTCACACAAATGAAAGCCTATATAACaaagattttttaaaaaaagacttacgcaagaaactgcatttttttttttttactcatttcatacgtttttaataaaaaaaagttctgttcacttaacttcaaataaaagcTGAGCATTTTTAAGAAGCTAAAAGAAAAGACTAAGATACTTGGGAAGTTGGAGTCCACTAATATTGACAGTCTGCATCGAGAATCTGCACGTTTGCTTTAGGCTATATCTACAATTGAACTTGCAAGGTTTAGAATTACCCAGATTTTCACCCCACTTACCAACACAGgaggtttcattttgttttattgcaaaacacaaaaacaggcattttaaaaaaaactgagatTTACATGGAAATTACTACAGTTTATAAACATGAGCATTGACCACATAATAGATGAAATACAGGAGCTGGAATGTCCAAATCTAGAACCACATACTAAAAACAAACCGTTCATTTTATACAGGAAAATTGCCTTCGGTGCTTTTATGAACTTTCGAAACTTTTAAACCAAAGAAATTAAGATCTTCATCAAGGCGTCTGCATCCATACATTTAACAAAGGTTTTTCGACAATGAAGCAAATACTCTATGTCCACTTCACATTACTGGCCCTGTGCAGAagaaatacataagaaatacatataagGTTAACAACAGGAACATCTACCaagcttaaaaagaaaacaaaagctaaaaaACCTGTAtaggggggaaaataaatgttagtaAGGTGCCAGTCCTTCTGGAGTTCTGCCACCTGGAGAGGAAACGTTAGGACATCACACAAGCCAATTTATTACACAAGCTTCTCTTAGCTGGACAACTAGTCTCGGAGATCAAAACCAAAAGATGCTGAGTATGGAAGACCACACGTTAACATTAGAGCAATTGTTTAGCAAGACGGTACCTGCTGTGCCTGTGGTGCAGGGGGGTGCGGGGGCATGGCCTGGGGGCTGGCCTGCCCGTAATAGGCTGCCTGCTGTCTGTAGTACTCAGCCCACGCTGCACTGTAATCGGGCTGGCCGCCTGCCTGGGATGCGGCAGCTGCAGCCGGAGCAGCTTGACCTTCTTGTTTTTTGTAGTACTCTTCCCAGGCCTTTGTGTAGTCCTGTGGTTGCTGCCCCTGTTGACCTGAAATAGCAAGGTACTTTAGCAATGCATCATTTTATAGAAGAATCCATCGTTTCCCACAACATTAAGCAAGTTAAAAACTTTACACCTCATTAGCTTACTTTCACATGTGTTTAGATTAGATGCGTTAAACCAAAACACACTTGTTTAGCTACTTCCTCCTCCATGTAGATGTGTGAAGATTTCAACATCTAAAAGACCACCACAAGCAATGCATTGTGGAACTTTCTACATAGAACTTCAGAGTCATTCAAAGTTATTCACAGTAAAGGAAATAAGTGAGAAATTGAAATCAAAGGTTTCTGACTAATCCCTTCTGACCTATCCCTAGCAGCAGTCACTGTTACACTAAAACCTAAAGTGCTCACTAACTGATCCCACTTGAGTCCGAATCTacgttttcaaaatattttataccCAATTTCTTGTAATAATCCTCCCAGGCCTTCGTGTAATCTGCCTGTCCACTCTGACCTGGAGCCTGCTGGTCACCTGTTAAAAATGGTACAATTTAATTGATAACCATTCTTAAAAAGGCTGCagtatccccccccccacctgtcTCTTTCATAAGTAAATGAACCATTTGTTGCAGGACAAAACCATGTCTCTACCCTAGTAATTTAGAGACTAAATATGAAGTGCTTCAGGGTGCATGTCCTGACCGTCTCTACAGCAACAGAAGGCAAAAGAAATCTGTTGATTCTCATAAACCAGAAGAAGCTCACTTATTTAGTTTATCTGTTTTGTATGTGTGAGGACGATTCAGGGCTCCGACAGTTAAGGATCAAAACCTTCTTGAATTTCGCCCCAACTCAGCAGATTTCTATTGACTCTGGTTTCCTTAGCAAGATGCTAATCAAACCAAAATATCAAACTTCACACATCTCAGAACAGCATGCTACACTGAAATACTGCAGCGAAGGAGGGGAGTAGGCCTGAACGATGACTTACTTTGTCCGTTCGTTTGTGCAGACCCTGGGGCAGCGTTTGTGGCTGCGATGGGTGCTTGAGGTTGTTGCTGATACTGAGAATAATAAGCTGCCCATGCTGCTGCATTAGCATCTGCTGCTGCTTTACCTGTGAAACCGGGATCTTGTTGTCCCTGCTGCCAATGTGGGAAGCCATTTCCCCATCCCTGTGGCTGATATGGTGCAGGAGGAccactaaaacaaaaatcagaggATCAGCTCTGGAAACAGGCCAGAGGGTGGGGAATCGTACAACAATTTACATGTTAAGAGTTTTAAATCATACCTGAACTAGCAAAGGAAATTACATGAAAGTAACATTACAG
>TU181877
TTGATCTTTCATCTAAtacaagtttattattttttaacataggAACAATGTTGCACACACTTGGAACAGTTAAGTCTATAAAAGTACATTGTGGAATACACAGCACATTTCACCAGTGTTAGTTTACCTCTAATGCATGCTCCCCCTTTTGGATATTTCTCAGTATagcttctgtttttgtcttcttttctaCACCCCCAGGACTTTTCTGTTGAGAACACTTTCCTCAAAAGGAAACAGCATCtcatgcatataaataaaatatatgcagcCAAACACAAAAATGGGCAACAATTTATAAACTTGCAAGTTTAAACTAGATTTAAACATTAGACAGATTAGCCAATTAACTGCCACAATCTAAACTTTTCTACTAAACGTCATCAAAAAAGTTTCAAGtctactttaaaattaaatttctaAATTCTCATTATTGCAAACTGTTGTCAGGAATATTCAACACCTTATCTATAAGAAATGAGCACTGCCagttaaagaaaaagcatttgtaTAAGTctgcattgtttaaaataaactacattacaAGACACTGAACACCAATAGATTAATTTATGATACAAATGACATTTGTTAGCAATAAGCATTTCAGTGTAATAAACATGGATATGTACACAGACCCTAAACTGACAGAAAGAACATTGATTTCTCAATTATAACAATTCCTCAAGTTTACCTTATAACTGGAGCCCTTGATTGGTCTACGTTCACCAGTGGAATACACTCAAAGGATTCCTCCTTAGGGACAAACTATCTCGGGGCCTGATTCTATGAACTATGCTTGCAGCATCTTCAACactgtgtgtgaaaatgaaggcagcatttttaaaatgatataaacaCTATTAAAATGGGGCATCacaaagatttcaaaccaagaatacatacaaattagAAGTATATGCCATTAAATGTCTTAAACAGATTCATATATTAGGTTTAAAATACCGGCATCTCAAATTGCATGCAAAATATTATACTGATgtcaatgaaaagaaaagcaataccTATTTTATTGTGCATTATAAATCGCACTAAATAAAACTAGACTTACCATGAAACCAATGTACATAGTTAATCATGGAAATGCTGTACGTCTACAAGATCTACATTAAAGTCATACAACTGTATATTACTTATGCAATACGGAACTGGCAAATTGACAAGTTTCACAAACTCAAACCTATTCTGGAAATCAGTGCAGTCAAAAGGAAAGCAAGTGATATGTAACTACCTTAGCACAAATActttcatttcagttcaatatGCTTCAtgtgggagaaaaaataatgccATGCAATTGATTAATGTTCAGAACATATGCAATCTGAAATACATGAAGGCTGTTGCTACTCCTCTGATTCATTTCAAGATCAGACAATAGTTTGAACAAGAGTGGAATGCATCCCTATCAGCTTCACCATTTctcagaacaaaaacatttactggAACTACAAAGGCAAGTCAAGTCATTCACAGTTCAAACACTGGGTTCCTTAGGTTATGCTTACCTGTTAAACTGCAGCAGAACCTAAGGTGCAAGGTCGGGTGACACTGCAAAGATTAAATATTGCACTGTTTGCCATCAGTGAGGATTCAATCATTCATTTATGAATCAGTTCAACAGCCTCCAGTATAAAATGCTCTATCAAACAATGGCATgtcaaaaaaatgcaaatttgatCAGCAGAATAAGTCTACAATCCTAGAGAGCTTTTCTGGTAGTATCTAAGTAACTTAaacattgaaattgtttatCTATTATGCAAAACTTACTAGTGATATCTTACTGCATGAGAAAGCATTCATTACAGAttctttacatttctcagtgacATTTACTGGACCCTTGTTCACATGCTACAAATGTCATTAATCTGCTTAACGTTCAGATTCTTAAAACAGTTGCTAATTTCAATCTTGgaataattttgaattttagagtttaaattaaattgttacgTATACAACACATCTAAGGTGCAAACATTTCCTGTGAACAGAAAACCTACCAATTGCACATTCTAATATTTGCAAAGGATTTACTAAAAGCTTACACAGCACTCACATTTCAGAGTATCGAAAGGGAATGGTCCGACTGATGCATTCCTAAAAAAGCACAGTAGTCTAGAAAACAAACTACAGTACCACTTTTTAAGCAGTAACCTAAATGCACTCATTTTCCATGGTTATTGCAGCACAAGACCGTGaaaagtttacatttaaataaacttcaTAAGGCATGATGGAATACTTAAGGAAAGGAGTCACAGTAAAGGTTTAAATACACgcgttttagtattttaatacttacccagaaacagaacagagcctattttttcaataaatgcatatttcacGGCCACTGGAAAGACACTACATTTTCAGTCTCTcaaagaaatacattgaaagaGGAATTTGGTTCCATCAAAGTCGTGTACTTACAGCGTAATCTCTCCTTGAAGGAACAAATCAAGGATGATGTACAGCGAGGGCCTCCTCAGCCCTACAAATCTAGACCTACCCTGGATGAACTTTAACAGACAATGGCAAAGCAAATAGAttttgcattcatgtttttcttttaatcatagcaaatgtttttaaaaaaagccaGCAAATATACAAAGCAAACAATGGCTTTAAGACACCCAAATAGGAAGAACAAAATTCAGTACTTTTGCAaagaaattgtttctgttaatgtaaAAACACTTTTACCTGTGCTGTAAAAAAGCAGCAATTTCACTAAAATGTTCATAAAAAGTCACATTTAAGGGaacatttagtattttgtttctttttttgtttgcttaccGCTTTTCTAATCTTTCCTGTGAGGGAAAAAGTTGTTCTCTTATTATCAACAGTTCAGACTATCTCAAAGTCAGCAATCAGGTAAAGGTCATATACAGTACAACGAAAAATGCTACAGTACTAGGGCTGAAATTTTACTTGTATTGCCAACACTAACGCAGTATCATTACATACACATTAACCTATGGCTAAGTCACACAAATGAAAGCCTATATAACaaagattttttaaaaaaagacttacgcaagaaactgcatttttttttttttactcatttcatacgtttttaataaaaaaaagttctgttcacttaacttcaaataaaagcTGAGCATTTTTAAGAAGCTAAAAGAAAAGACTAAGATACTTGGGAAGTTGGAGTCCACTAATATTGACAGTCTGCATCGAGAATCTGCACGTTTGCTTTAGGCTATATCTACAATTGAACTTGCAAGGTTTAGAATTACCCAGATTTTCACCCCACTTACCAACACAGgaggtttcattttgttttattgcaaaacacaaaaacaggcattttaaaaaaaactgagatTTACATGGAAATTACTACAGTTTATAAACATGAGCATTGACCACATAATAGATGAAATACAGGAGCTGGAATGTCCAAATCTAGAACCACATACTAAAAACAAACCGTTCATTTTATACAGGAAAATTGCCTTCGGTGCTTTTATGAACTTTCGAAACTTTTAAACCAAAGAAATTAAGATCTTCATCAAGGCGTCTGCATCCATACATTTAACAAAGGTTTTTCGACAATGAAGCAAATACTCTATGTCCACTTCACATTACTGGCCCTGTGCAGAagaaatacataagaaatacatataagGTTAACAACAGGAACATCTACCaagcttaaaaagaaaacaaaagctaaaaaACCTGTAtaggggggaaaataaatgttagtaAGGTGCCAGTCCTTCTGGAGTTCTGCCACCTGGAGAGGAAACGTTAGGACATCACACAAGCCAATTTATTACACAAGCTTCTCTTAGCTGGACAACTAGTCTCGGAGATCAAAACCAAAAGATGCTGAGTATGGAAGACCACACGTTAACATTAGAGCAATTGTTTAGCAAGACGGTACCTGCTGTGCCTGTGGTGCAGGGGGGTGCGGGGGCATGGCCTGGGGGCTGGCCTGCCCGTAATAGGCTGCCTGCTGTCTGTAGTACTCAGCCCACGCTGCACTGTAATCGGGCTGGCCGCCTGCCTGGGATGCGGCAGCTGCAGCCGGAGCAGCTTGACCTTCTTGTTTTTTGTAGTACTCTTCCCAGGCCTTTGTGTAGTCCTGTGGTTGCTGCCCCAGCGTTTGTGGCTGCGATGGGTGCTTGAGGTTGTTGCTGATACTGAGAATAATAAGCTGCCCATGCTGCTGCATTAGCATCTGCTGCTGCTTTACCTGTGAAACATGCATATAAAACATGCAGAGCACAAAAGGAGTCATTCACAAGTGTACATAAACCCATAGTGGGATTagagcagtatatatatatataaaaaaaaactatccaaAGTATGAAAGCTTTAGTTTCTAAACGATTGTCGTTtgggatgtttttaaataaaattagggAACGCTCACTTACCGGGATCTTGTTGTCCCTGCTGCCAATGTGGGAAGCCATTTCCCCATCCCTGTGGCTGATATGGTGCAGGAGGAccactaaaacaaaaatcagaggATCAGCTCTGGAAACAGGCCAGAGGGTGGGGAATCGTACAACAATTTACATGTTAAGAGTTTTAAATCATACCTGAACTAGCAAAGGAAATTACATGAAAGTAACATTACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU181875 True 5476 lncRNA 0.37 3 11322583 11328481
TU181877 False 4662 lncRNA 0.36 3 11322583 11328481

Neighbor

gene id symbol gene type direction distance location
AMCG00004971 gipc2,dnajb4,LOC108430720 coding downstream 13340 11282626 ~ 11309243 (-)
AMCG00004960 NA coding downstream 59752 11254762 ~ 11262831 (-)
AMCG00004963 bt3l4,btf3l4,LOC107655993,LOC105028135,LOC103026176,LOC107562065 coding downstream 74829 11244611 ~ 11247754 (-)
AMCG00004961 LOC107553256,LOC107677579,LOC107732202 coding downstream 79157 11217636 ~ 11243426 (-)
AMCG00004962 NA coding downstream 121583 11196475 ~ 11201000 (-)
AMCG00004973 NA coding upstream 762 11329243 ~ 11339610 (-)
AMCG00004972 NA coding upstream 14851 11343332 ~ 11361553 (-)
AMCG00004997 NA coding upstream 84418 11412899 ~ 11438182 (-)
AMCG00004999 ak5,LOC102787869 coding upstream 123261 11451742 ~ 11462502 (-)
AMCG00004998 st6galnac5,LOC103370426 coding upstream 181739 11510220 ~ 11525189 (-)
G144612 fubp1 non-coding downstream 577 11319126 ~ 11322006 (-)
G144587 NA non-coding downstream 68009 11253615 ~ 11254574 (-)
G144502 NA non-coding downstream 364582 10956085 ~ 10958001 (-)
G144353 NA non-coding downstream 1383972 9937980 ~ 9938611 (-)
G144295 NA non-coding downstream 1571805 9744869 ~ 9750778 (-)
G144657 NA non-coding upstream 170691 11499172 ~ 11501075 (-)
G144659 NA non-coding upstream 177197 11505678 ~ 11506002 (-)
G144672 NA non-coding upstream 242709 11571190 ~ 11572410 (-)
G144821 NA non-coding upstream 681437 12009918 ~ 12010371 (-)
G144826 NA non-coding upstream 695033 12023514 ~ 12029449 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 2415989 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 2474808 8836360 ~ 8847775 (-)
G144050 selenof,LOC106598901 other downstream 2945582 8353989 ~ 8377001 (-)
G143659 NA other downstream 5539399 5736809 ~ 5783184 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 7206169 4109082 ~ 4116414 (-)
AMCG00005011 best4,LOC103396708 other upstream 806897 12135378 ~ 12156378 (-)
AMCG00005022 NA other upstream 1016190 12344671 ~ 12348328 (-)
G145046 NA other upstream 2007728 13336209 ~ 13336746 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 3635933 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 4174601 15503082 ~ 15535145 (-)

Expression


Co-expression Network