G146532


Basic Information

Item Value
gene id G146532
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20274391 ~ 20279746 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU184357
TTAACAACAACATGCATTTACAcgacagttaaaaaataaaaagatattgCACTGATTCAATCTAATCATGTCTCACAACCCTACAGCCTCCACCTCATCGCACTGCAACTGCAGCCCCCCCACCTCTCACAGAAGAGAAAAACCACccccacaacaaaataaaatctccaCAGTTCCCCCCGCGCTCCTATACATTCACACCGCCCCCCCAGCCTGCCAGGTCGGTCCCGAGGCTCCGGCTCCTACACAGAGACACCCAACACTGCTAACACTGCGCACACACGGcttatatacaataaatatgtttttgtttgtttattcttttaaaattcTAAACACATGgatgttaaaaacacacaggcGTGGTCTAGGCATGTACAGGTGTGTGGTGTCGGGGGGGCTGGCGGAGAACACGCACACGGGAAGTGGAGGGGTGGGAGACCAGCCGGGAACGAGAGGTCTGTTCTCCGGCCTCGGTCCAGACTGAGGACTGTGGATCTGAGGTCGGGCCAGAGAAGAAGCGGATGGAGGCTGGGGGGTGCCAGAGACCCTCCCACACACCAGGGGGCAGCGTACAAAGTGCGTTCGCCTAGAAAGCACCGTCTACACGTCACCTGCTGCAGACAACGCACTAGAAACGCCccacgagagagagagtgtcctGAAGGGGGGAAACAACATGAGGGGTGAGGATTTAATCATCTCAAgaaacttttaatttatttgtcttgttttaaaagcaggctGTGGCCATGAGAAACTGCGGTTTAcgctgaaaagaaaaaaaagtgtgtgtgtgtgtgtgtgtttctacaGGGGGAACTACATGACTGTGTTCCATGTTCTCAGATTGGTTGAACCTCATGCATCTCAAATAtccattattaatttttttaagagtCTAATAGAGACCAATAGGCCAGTGGTCAGTGAGTTCTGAGCCGAACCACCGCTCCGGTTCATAGATTCATCTTCTAATTACGAGCAGACGAATCCAGGAGTCGATATGATGAATCCACGCAACGACGGTGCACAGTGAGTTTTGACCGCTTAGCATAACCCTCCTGGATGTCATGTCACACCTCCGGCTACGCAACAAATCACTGGCAGGGAGTCAGATCTGTAAATTCATCTCACGGTTCATACGAAACcgctttattttgttattctcgctctctctctatgCTCGTATAAACTTTCCCACACCGGGGCTGTGCGAGTCTTTAAACCATAACCACACACTCAGGGAGTCCAGAGTTAATtccagagagaaaaaataaaaaatagcatgCAATTAAACCCGTGAACGCTGCAGTAACAGGagtaaaatcttaaaaacactaaaaacgaAACGTGCAAGACATCGCCTAAGGAATGACTGTGAGGAATCTGACTCTGTACCCCTTTCTGGAAAAGCAGGAGAGGACAGTCTGTGCAAGGCGGTTTGCCAGCCGTCGTTTACCGTCTCGCCACCGCGGTACGGTCTGTGTGTTCCGCCCCGGGGGCCGATGGTGCCGATTTCATTAACcaggaagaagaggaaaaagtaaaactaaagaATGTATAACACCAACACGGGGAAGCAATTTTCTCCATCTGATTAGAGCTGCAGGCTGGCGGGGTCTGTGAATGCGAACGTGCTCGGGAAGCCGTTTCTCTCGATCCAGAGAtgctaattaaatcaataccgACGGCTCTGGCGGCCGGCGAGAGGAGTCTGCTTCAATTcaacactatttatttaattattcccTGGTTAAGATTCAAAACTGGCATcttaaaacaatcataaaatcGTCCTCGGGGGAAGGGAACAAAATCAAACGGGTTTACGCTGATAAATCAATGAATCCGAGCAGCTGCTCTCTCTCGGTTTGAGAGGGTCTCTCGGGGGTCCGGCGGTGTGGAAAAAGAAGACCGTTACGATcgttttaaaaaacagatttcagtTTAACTTGGCtttgtttattgctttattCCTTCTCCTGTTTTTGcaaattgtaatataaaaaatatgattcaaTGATCAGTGAGAACTTCCTCGACTTTTAAAAGGAATAAAGTATTTCTGGGAAGTAAAACGAACCGCTTCAGTTTCCCGCTCGGGATGCCGCTGACGTTCAGAACCACGTTCCTCCTTTGATCCATTCAACTGCAGTTATATTTCCGTGCTGTTATAACCGGGTCAGGTGTCTGTATCCCCtctcccccccatctctctcttcgCTCTGGCACAATCTGCCTTTCATTTAGATAAGCAGGATGTGACCAACCGACCCGTTCGGCCCGTCTCTCCCTGCCCTGGGCTCAGATAACGACAACGGAGAGGTGCCCAGTGTATTGTGGGAGTTTCCTCTCAGTCTCACAGAGCTGCGTATCAACTGATCGCCACACACTAAAGCTGGGCATCCGCGACTCAACCGGAAGTCTAAAACGGGCCAAACCATCCCTCTATTTCCATCCTTACAGTGGTGCCAAACCCCAGGGGGCCGCCAGTGAGATCAGGACTCTTATCTTAAAAAGTGTTTCACAGGACTGGGTGGCCAGTGCCGGGTTTGGCCTCGTAGTGGTCGGGGACTCGAGCTTTGGAGGGAGGAGTCTCACAGGGACCCGTGTTTGGACCGGGGCTAGCGATGAACACAACGCAGGGAGTCAAGAGTGTTTTTGGAGAAAGTTTACTTCACAGCCAGAAGGGATTTGGAGTACAGGGATTGCGAATGCCTTCCCAATTGGAGGGTTCAGTTTGCGAGTCTCCAGCCATCAACCCTCCCAACATCACACACCGGCACACCGACAAGCAACGGGGGGGAGAAGATACCCTGAAACACACGTGCGTCCGGTGCGACGCACTCGACACTCACAACGCGGGTCTCTCTCGATCGACAGGGGGCGGGAAATCCACAGGGGACACacgctcacgcacacacacgtacacagtGAAACCTGCTAGCGACGGGAGAGAGAACAAAAGTAaacaacacacagatacacagcaAGTTGGTCCAGATACAAAAACACTCAAGTACACTCTGAAACGGATCTGAAACAAACAGTGGCAAACGGGAGAGCAGGgctagaaataaagaaaacgtATTTCAATGTGATATCCCCGCCCTTCAACTAACAGAGTATATCGACGGGATTGTAGACCGTAAACAAACGAAGTGGCTCATGTTTGCAAAACGACAAGTACAAATCATCGCTGTTTTTGGCTACTTATTTCagtacaaactttttttttttttattattattatttttcacaaaaacgttcatatatttatatataatcgTACAAATATCAACATCTCAAAACGGCGAATGTTTGCGGAGTGGATACGATAATGACCGAGCACTTCTCAATAGATCCCCCTAAGCACTGATGTGTAGTTTTGAACCCACGAGAGCCGGCACTGGGACCCCGCAGTCGAGCCGCATGAAGCCGGGTCTAGCTCCCTCGGAGGAAACATGGGTCTCTCACAGCCACGTGAGGCAGGACAAGACTTTGAGCAGCACACTACTCCTACTACAacactcaaaacacacacatatatagatacacacacttAACTATGACAGGAGTGCCAATGAAACGGTAACGGACATCTTGGCAAGCGAAGACGGTGCCATGCGGCCATCGCGGAGAGCTGGCGTGGTTCTGGGCGGTGAGCGAGTCGATGCGGGCGGTTTCAGTCGGTCTAGAGAACTACAGGAGTTTCTGCGGAGAGTTTTTTCTCCTCTTCGTCTAATGAAATGCACGATGGAGCCACTCGACACGAGGCGGGAAACTCAGTCTGTTTTCCTGCGTGCGTGTGGTGCCGTGTGAACAAGTGGCAATacaggctttgtttttttattatttacttaaatgtaatttatacaaATTGCTAAGCATACGCTACTTTTATTGCTGAAATACATCAATTTAACCGTACGTTTCTCTcgggggggaaaaacacatgCGGGCGGGAGCGAGATATTGAGTTCGTTAAGGCACAACCTGCTCCATTGCCTGGAGGACAGATGCGGGCTCAGACAGTCTCCCAGCGCAGAGACACGGCAAAATCAaggtgtgtgcgtgcgtgtgtgtgagaagcCCACTCTCTCGGCACAGACCAGATCAGTCACACGGTTTATTTCTAGCCCTGCCGGTTACGGAGAGAAGCGCCGAGGTCACTCGCtctcctggaaaaaaaaacaacaaaaaaaacaacaaaaacatatgcAGCGGTATGGAACTGAGGAGTGTGTCTGAAGTCACACAGACGTGTTTACAGCTGAACATCGGTTCTCTCAGAATTAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU184357 True 4303 TUCP 0.48 2 20274391 20279746

Neighbor

gene id symbol gene type direction distance location
AMCG00005266 NA coding downstream 87954 20182380 ~ 20186437 (-)
AMCG00005265 ipp coding downstream 93412 20175497 ~ 20180979 (-)
AMCG00005267 LOC106560440 coding downstream 100334 20163351 ~ 20174057 (-)
AMCG00005269 NA coding downstream 115290 20147412 ~ 20159101 (-)
AMCG00005264 prdx1,tdx,LOC108267618,LOC108430734,LOC105891340,LOC106600402 coding downstream 142652 20127159 ~ 20131739 (-)
AMCG00005271 NA coding upstream 90922 20370668 ~ 20391561 (-)
AMCG00005277 LOC103468264,LOC108238356,LOC106512499 coding upstream 244300 20524046 ~ 20525301 (-)
AMCG00005275 NA coding upstream 262356 20542102 ~ 20547367 (-)
AMCG00005294 NA coding upstream 359912 20639658 ~ 20643224 (-)
AMCG00005295 NA coding upstream 367810 20647556 ~ 20677947 (-)
G146503 NA non-coding downstream 127037 20146085 ~ 20147354 (-)
G146487 NA non-coding downstream 164861 20108125 ~ 20109530 (-)
G146469 NA non-coding downstream 210978 20062549 ~ 20063413 (-)
G146461 NA non-coding downstream 221470 20050116 ~ 20052921 (-)
G146358 NA non-coding downstream 499400 19771772 ~ 19774991 (-)
G146576 NA non-coding upstream 241903 20521649 ~ 20523818 (-)
G146578 NA non-coding upstream 254622 20534368 ~ 20535200 (-)
G146607 NA non-coding upstream 319493 20599239 ~ 20599503 (-)
G146609 NA non-coding upstream 320428 20600174 ~ 20600514 (-)
G146623 NA non-coding upstream 354378 20634124 ~ 20636209 (-)
AMCG00005263 NA other downstream 166564 20103626 ~ 20107827 (-)
AMCG00005256 cpt2,clg17h1orf123,c20h1orf123,cunh1orf123,LOC107668114,LOC107585892,LOC107695271,LOC108441638,LOC107549124,LOC105891296,LOC105925314,LOC106930840,LOC103363808 other downstream 250884 19999167 ~ 20023507 (-)
AMCG00005240 NA other downstream 512945 19758232 ~ 19761446 (-)
G146313 NA other downstream 701073 19570059 ~ 19573318 (-)
AMCG00005214 NA other downstream 1249930 19013077 ~ 19024461 (-)
AMCG00005270 pik3r3b,LOC107675943,LOC106584012 other upstream 36314 20316060 ~ 20339165 (-)
AMCG00005276 pomgnt1 other upstream 211305 20491051 ~ 20502206 (-)
G146618 NA other upstream 329608 20609354 ~ 20610643 (-)
AMCG00005333 NA other upstream 1206203 21485949 ~ 21487711 (-)
G146938 NA other upstream 1465130 21744876 ~ 21745453 (-)

Expression


Co-expression Network