AMCG00005388


Basic Information

Item Value
gene id AMCG00005388
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 871157 ~ 873005 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005388
ATGCAGGGTCCAGGGGGGTCCAGTGCCTCAGCAGCATCACCGCACCGCGGCCAGACCCGCACAGACCCGCAACACGTCCGTCACTGCgctcccacaatgcattgtctTGTGCGCTGTGTGGGAGGGGGCCGTGTCGGCGCTCGCCCGTGGGTGACCCTGGCTGCGGGACACAGTGCGGTTCAGTCCCGCATTGATCAAGCAGCACGGCGGCAGCTGCACCCTGACCCGGCCCGGCCTGGACGCGCACAGCGGCGGAGACGATTTAGAAACGGCATCAAACCGCGCAGCTGCCACGTCGGTGTCGCTGCTACAATAAGCAGAAGCGCCCAGAGCAGCGCATCCTCGGCGGCCACCGTGTCATCGAGGCGTTTCTTATTCCAGCGCTGCCGTGCCGCAATGTGTCTGCTTTATGAAACCAACCCTTTCCCGCCACCCCGTCCAGCTGTCCCCGTGTCTCCCAGCATGGCTCAGGGCCCCAGCATCCGCTTCCGCTTTGTGGGCTACGGGCTGCTGCAGAAGATGGATGTGCTGCGGGAGCAGAGCCGGTTCTGTGACGTTACCGTGCACGTCGACATGCTCACTTTCCAGGGACACAGGGTGGTGCTGgcagcctcctcctccttcctgaGGGACCAGTTCCTGCTGAAGGACTCTACGGAGGCCACGTTATCTGTGGCTCAGAAGCCAGAGGTGGCCCTGGAGCTCCTGCGGTCCTGCTACACTGGCGTCCTGGAGTTCCCCCTGAAGGAGCTCATTCACTACCTCACAGCGGCCAGCTACCTGCAGATGAGCCACGTGGTGGAGAAGTGCCAGCAGGCTGCCAGCCAGTATGTCGAACCCAGCTTCTCCTTGGGCGACATTGACCTTGGCCAAGAGAACGACCATGATCCAGATCTCAGCTCCTCAAGTGAGGACATGGACCAGGAGGCGGCAGAAACCAGACCCAGGAAACACAGAGCCCGAGCCATAGCCGAGTCTCCGGAGCGGCCCAAGATAGAGTGGAAGGCGGAGCCGTGTGAGGTCTCTGAGCAGGAGAGCAGTGCGCTGTCCCCACTTCCCGGCCAGGCCCGCAGCCCTGTGACGTCTGAGTGGGTCAGTGCGGAGGACTTGCTTGTCATGAACAATGAGCTGGAGTTCCAGGGCTTGCATCCTCCCCCAGACCTTCCTGCCCGGGATGAGACTGAGAAGGGCCCCCCGGAGGGACTCCTTAAAGGGCCGTACCACTGCCGGGTCTGCTCCCAGGTCTTCAGGCTGCTGGAGAAGTATGTCTCGCACATGAGGGAGCACAAGGTGTCCCTGTGCCTGCGCTGCGGGAAGACCTTCTCCCAGAAAGTGAACCTGAAGCGGCATGTCCGCAGCCACATGGGCTTCAAGCCCTACCAGTGCCAGCTGTGCCAGAAGGTCTTCTCCCAGAAGGTCTCCCTGCAGGACCACCTGAACCTGCACAGTGGCGCCCGTCCACACCGCTGCAGCTGCTGCGACATGCAGTTCACACACAAGCCGGCGCTCCGGCGCCACCTGCGTGAGTGCCACGGGAAGAGCGCGGTGGACAGTTTCAGCTTGGAAATCCAGGAGGTGGTGCTCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005388 True 1587 mRNA 0.63 2 871157 873005

Neighbor

gene id symbol gene type direction distance location
AMCG00005387 tmem132e coding downstream 470360 398920 ~ 400797 (-)
AMCG00005391 NA coding downstream 496145 350765 ~ 375012 (-)
AMCG00005395 lig3,LOC102796838,LOC107587693,LOC105924869 coding downstream 603467 260508 ~ 267690 (-)
AMCG00005394 tmem248 coding downstream 619984 248099 ~ 251173 (-)
AMCG00005396 NA coding downstream 638782 227258 ~ 232375 (-)
AMCG00005454 NA coding upstream 98666 971671 ~ 973719 (-)
AMCG00005474 NA coding upstream 141647 1014652 ~ 1021117 (-)
AMCG00005476 mdh2,LOC106908802,LOC103136570 coding upstream 150030 1023035 ~ 1027249 (-)
AMCG00005475 porb,LOC107728227,LOC107598574,LOC107703971,LOC108424088 coding upstream 163091 1036096 ~ 1051408 (-)
AMCG00005473 NA coding upstream 186248 1059253 ~ 1062795 (-)
G151979 NA non-coding downstream 180215 690659 ~ 690942 (-)
G151972 NA non-coding downstream 493444 377355 ~ 377713 (-)
G151970 NA non-coding downstream 520835 346997 ~ 350322 (-)
G151957 NA non-coding downstream 538813 242154 ~ 332344 (-)
G151903 NA non-coding downstream 834762 35722 ~ 36395 (-)
G152071 NA non-coding upstream 125349 998354 ~ 1009739 (-)
G152085 NA non-coding upstream 192454 1065459 ~ 1070656 (-)
G152178 NA non-coding upstream 524336 1397341 ~ 1398392 (-)
G152197 NA non-coding upstream 585232 1458237 ~ 1458662 (-)
G152320 NA non-coding upstream 819744 1692749 ~ 1693555 (-)
AMCG00005400 doc2b,LOC105895337,LOC107681901 other downstream 750610 108398 ~ 120547 (-)
AMCG00005399 NA other downstream 771487 94352 ~ 99670 (-)
AMCG00005407 polr2j,LOC107587688 other downstream 804124 62355 ~ 67033 (-)
G152133 NA other upstream 346322 1219327 ~ 1335440 (-)
AMCG00005419 NA other upstream 498337 1371342 ~ 1376473 (-)
G152277 NA other upstream 632935 1505940 ~ 1507628 (-)
G152271 NA other upstream 648737 1521742 ~ 1615497 (-)
AMCG00005461 eif4h other upstream 835678 1708683 ~ 1723500 (-)

Expression


Co-expression Network