AMCG00005473


Basic Information

Item Value
gene id AMCG00005473
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1059253 ~ 1062795 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005473
CCGGAAGTAGGAAgcagattaaaataatgttgcCGGAAGTGAGTTAGTGACCGAAAACCTGTGCCTTTAAGTAAAAGTTTATTCGGCCCCTGATATCGGGTGTAGAATTCGCCTCACAGTTTTAAACATCCTGCCTAATCGTGTAATTTATGACTTGTGCTTAGTAGAAAAAAGATACACACAGGCAATGGACCCGACAAAGCTCCTACGGCAGTGTCTGCACAGGGCCAGAGAGGTGCTGCCGGCGGGCGAGCTGACGAGCGGCGCGGCTCTGGCCGTCGCGATATCGGCAGCGGTGTACATCGCCACGGCTCGCTTCAGTGTCGCTCCGGAGGTGCTCAGCCTGGGGCCCGGCGCCCTCGCAGACTGGCACGTGCACAAGCTGGTGACCTACTCCTTCTGCCACACGGACCcgtggctgctgctgctacagGCCGGCGCACTGTGTCTGTTCGGCTGCGGCCTGGAGCGCAGCGTGGGCACGGCCCGGTTCtgctgcctgctgctgctgctctccgGGTGGACCGGGTTCCTGCACgccctgctggagctgctgctgttcGGCCGGGCAGGGGGCGGCTCGGTGCACGGCCTCCTGCCCGTGACCCTCGCAATGGTGGGCATGGCCACCGTGCGCTCACGGATCCGCCGGGCACTGCTGTGCGGGGTGAACGTGCCCCGCGCCGCCCTGCCGTGGCTGTTCCTCCTCGCCTCGCTGCTCGTCCCCAGTGCCAGCTTCCTCTGCAACCTCGTGGCTGTCCTGGTGGGACAGGCCTATGGAGTGGGCAGGTGTTTCCTGCTGGACGTGTCCGAGACGAGGGCCTGTGTCCTGGATAAGACGGTGCCCTTCAGGCTGCTGAGGAGGCTGGGAGTGGCGGTCTATGTCCCCGCGTCGGTGCAGGAGAGGCGGACAGCTCTGCATAAACCACTCACTCCGGCAGCCGGTTCCTATCCAGTCCAAGTCTACGCCCCTGTGTCGGCCATCCCGCCCCAGCAGTCTCTGTCCCAGAGCTATGAGGGCTGGCAGAACTCTCCCTACAGCCCGGGCAGCTACTTCCCTCCTGCACCCCATCATGCTCACGGTCATGGGCACACAGTCCACCAGAACACGGGCAGCCAGCCGGGACACGGAGGCTGCTGTGGGCACGCGCACTCCAGCCCCTCTGCCCCAACCCCTGGCCACCACGGCAGCTACTCTTTCCCCTCTGTGCAGCCTGGAGGGCCAGTGCACTTCTCAGGAGGGCCGTCCCTAGCGCCCAGCCTGGTCAATGCTGGGGCCCACGTGGGGCCCCCTTCAGTGGGCATGGCAGGTGTGAGCTGGCCGGGGCAAACCGTGCACAGCCCTGCTGGACTGGTGGTAAAATAGACCTTCTGCTTCTCTTCCCCTGACTGGTGCGATCGGTTGACAACGGCCTGTGGGGCAGTCCTGCAGTGTGGGACACCCCGGCAGCTGGCGAACGTGGCCACCCACATCGGAAgttaggaaattaaaaacatcacactacatttaaaactaaattaaaaataattccatCAAAGAAACTCTGCTGCCAGTTTTTGGCTCCGTGACAAAGCACTTTCTGAAGCTGAGTCTCCAGCATTGCCTTGTGTTCCCTCCACACCTGCGCACAGTGTCCGAATCCGTCGAGACACGGGAGGGTGGCTGACCGTGTGggtgtgggttttgttttttatgcatttttatgaaagtgtaaatattcatttttttctaacaGGTGTATAAACATAAAAACCTTTCCTATTCAAAGCATTTACCTCTCTCGTGTGGAATGCCTTTTCATCCCCCATATTCAGTCAGCTAAGCTttacttgaaaaacaaaaacaaacaaaaacactcactACAACTTCCACACAATACTTAATCTCCATTGTGAAGGACTTTCCAAGTGAAATGTAATCCGCGTGAAAGGTCTTGCAGGTGAACGCAGCAGTGCAGCCTGcggggggggcagtgtgtgCGTTTCAGGGGCAGTGTAGCAGAGGGACAAACAGCATGGGGGGGTGTGGCGGCACACTGTTACAACGCCTGGCTTTTGCCGCTGTAACAAAACTGCTGGAATCTCTAGACACGAAGATGAAAGCAGCAGAACGTGAACCGAAGGAGAGGATGGATATCAAGgtttctttgtctgtttttatttgattttaaatattctccCTGTAATGACCCTGGCCACCAGCAGGAGGAGTATATACTCTGGTGACATCATGAACTCTGGGCTCTGAGCATCGCTGCCTGCCAGGAGCACAGACCCCTACAGTGATCGGCAGTGGGGGCTTGTGCTCCATGCCCAgcttatttaatcattttaaattctagTTATGAATGATCTGAAGGTACTTGGCATGTGA

Function

GO: NA

KEGG:

id description
K09652 RHBDD2, RHBDL7; rhomboid domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005473 True 2374 mRNA 0.57 4 1059253 1062795

Neighbor

gene id symbol gene type direction distance location
AMCG00005475 porb,LOC107728227,LOC107598574,LOC107703971,LOC108424088 coding downstream 7845 1036096 ~ 1051408 (-)
AMCG00005476 mdh2,LOC106908802,LOC103136570 coding downstream 32004 1023035 ~ 1027249 (-)
AMCG00005474 NA coding downstream 38136 1014652 ~ 1021117 (-)
AMCG00005454 NA coding downstream 85534 971671 ~ 973719 (-)
AMCG00005388 NA coding downstream 186248 871157 ~ 873005 (-)
AMCG00005389 NA coding upstream 46806 1109601 ~ 1111890 (-)
AMCG00005417 NA coding upstream 236571 1299366 ~ 1300547 (-)
AMCG00005427 ppm1e,LOC102780278 coding upstream 369109 1431904 ~ 1436308 (-)
AMCG00005428 rad51c,LOC107691693 coding upstream 399437 1462232 ~ 1467875 (-)
AMCG00005426 NA coding upstream 417381 1480176 ~ 1485828 (-)
G152071 NA non-coding downstream 49514 998354 ~ 1009739 (-)
G151979 NA non-coding downstream 368311 690659 ~ 690942 (-)
G151972 NA non-coding downstream 681540 377355 ~ 377713 (-)
G151970 NA non-coding downstream 708931 346997 ~ 350322 (-)
G151957 NA non-coding downstream 726909 242154 ~ 332344 (-)
G152085 NA non-coding upstream 2664 1065459 ~ 1070656 (-)
G152178 NA non-coding upstream 334546 1397341 ~ 1398392 (-)
G152197 NA non-coding upstream 395442 1458237 ~ 1458662 (-)
G152320 NA non-coding upstream 629954 1692749 ~ 1693555 (-)
G152335 NA non-coding upstream 683158 1745953 ~ 1752738 (-)
AMCG00005400 doc2b,LOC105895337,LOC107681901 other downstream 938706 108398 ~ 120547 (-)
AMCG00005399 NA other downstream 959583 94352 ~ 99670 (-)
AMCG00005407 polr2j,LOC107587688 other downstream 992220 62355 ~ 67033 (-)
G152133 NA other upstream 156532 1219327 ~ 1335440 (-)
AMCG00005419 NA other upstream 308547 1371342 ~ 1376473 (-)
G152277 NA other upstream 443145 1505940 ~ 1507628 (-)
G152271 NA other upstream 458947 1521742 ~ 1615497 (-)
AMCG00005461 eif4h other upstream 645888 1708683 ~ 1723500 (-)

Expression


Co-expression Network