AMCG00005475 (porb,LOC107728227,LOC107598574,LOC107703971,LOC108424088)


Basic Information

Item Value
gene id AMCG00005475
gene name porb,LOC107728227,LOC107598574,LOC107703971,LOC108424088
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1036096 ~ 1051408 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005475
ATGTCCTGTGTCTTGTCCTCCGCAGCGCTGCTTATTGCCATGGCGGATTCTGACACGGAGCGCCAGCCCCCGGAGGCCGTGGCCGCGGACGAGCCCTTCCTCACCTCTCTGGACCTGTTCCTGTTCTCCCTCATCGCCGGCCTGCTCATCTACTGGTTCATCTTCCgcaagaagaaggaggagatcCCGGAGTTCAAGCCGCTGCCCATACAaacGGCTGCTGCCCGGGAGACCAGTTTCAttgaaaagatgaaaaaaacgGGCAAGAACATCGTGGTGTTCTACGGCTCTCAAACTGGCACTGCGGAGGAGTTTTCCAACCGGCTGTCCAAAGACGCCCATCGCTATGGGATGAGGGGAATGGCGGCCGACCCCGAGGAGTACGACATGTCTGAGCTCTCCCGCCTCACCGAGATCGAGAACTCCATCTGTGTGTTCTGCATGGCCACCTACGGGGAGGGAGACCCCACGGACAACGCCCAGGACTTCTACGACTGGCTCCAGGAGGTGGACGTCGACCTGTCAGGTGTCAACTTCACGGTGTTCGGGCTGGGGAATAAGACGTACGAGCACTACAACGCCATGGGGAAGTATGTGGACAAGAGGCTGGAGGAGCTGGGTGCGCAGAGGATCTTTGACCTGGGCATGGGCGACGACGACGCCAAccTGGAAGAGGACTTCGTCTCCTGGCGGGAGCAGTTCTGGCCCGCTGTGTGCGAGCACTTTGGGGTGGAGGCGACCGGAGACGAATCCAGTATCCGTCAGTACGAGCTGGTGGTCCACACTGACATGCACACGAGCAAGGTGTACAGCGGGGAGCTGGGCCGGCTGAAGAGTTTCGAGACGCAGAAGCCGCCCTTTGACACCAAGAACCCCTTCCTGGCGTCGGTCACGGCCAACAGGAAGCTGAATAAGGGCGGCAGCCGACACCTCATGCACCTGGAGCTGGACATCACGGGCTCCAAGATCAGGTACGAGTCCGGAGACCACGTGGCGGTGTACCCTGTCAACGACTCGGCCATTGTCAACAAGATCGGAGAGCTGCTCGGCGTGGACCTTGACACCGTAATCTCGCTCAACAACCTTGACGAGGAGTCCAACAAGAAGCACCCGTTCCCCTGCCCCACCACATACCGCACGGCGCTCACTCACTACCTGGACATCACCAGCACACCGCGAACCAACGTGCTGTATGAGCTGGCGCAGTACGCCACCGAGCCCAAGGAGCAGGAGACCCTGCGTAAGATGGCCTCCTCCTCGCCTGAGGGCAAGGGTCTGTACAACAGCTGGGTGCTGGAGGCCAAGCGCAACATCCTGGCCATCCTGCAGGACATGCCCAGCCTGCGGCCGCCCCTGGACCACCTGTGTGAGCTGATGCCCCGCCTGCAGGCGCGGTACTACTCCATCGCCTCCTCCTCAAAGGTTCACGCCAACTCCCTGCACATCTGCGCCGTGGTGGTGGAGTATGAGACCAAGACGGGCCGTGTGAACAAGGGCGTGGCCACCAACTGGCTGAAGAACAAGGTGGTGACGGACAACGGGCACAAGTCCACCGTGCCCATGTACGTCCGGAAGTCGCAGTTCCGGCTGCCCTTCAAAGCCAGCAACCCGGTGATCATGATCGGGCCGGGCACGGGCATCGCTCCCTTCATGGGCTTCATCCAGGAGAGGGGCTGGCTGAAGGAGCAAGGCAAGGAAGTGGGTGAGACAGTGCTGTACTACGGGTGCCGCTATAAGAACGAGGATTTCCTGTaccaggaggagctggagaagtTCCAGAAGAACGGGGTGCTCACCCAGCTCAACGTGGCCTTCTCCCGAGACCAGGAGCAGAAGAGGTACGTGCAGCACCTGCTGAAGGAGAACAAGGAGCACCTGTGGAAGCTGATCCACAGCGAGAACGCGCACATCTACGTCTGCGGGGACGCCCGCAACATGGCGAGAGACGTGCAGAACGCCTTCTACGAGATCGCCTCCGAGCTGGGGGGCCTGGCGCACGCCCAGGCGGTCGACTACATCAAGAAGCTCATGACCAAGGGACGCTACTCGCAGGACGTCTGGAGCTAAACGGGGTCCCCTGCGCCGGCCAGCAGGGCTTCGGAGGGGGGTGGCGGAGTCGGTTTagtttatgtgtttgtatgttttcctaCTTTGGGGGATGCGTGAAACGGTGGAGATTTCGTTGCTGCTGGTCTCTTAACGGTTATTGACCGGCACACACCAATGCAAGACCAGAAAAACGACAACAAAACTGTCTCGCATCTTCTTTAGCAAGTGTTAATAATTCTGATCTATTCTGAAGAACagatgtctctgtgtttaaacatAACAGTCCTGTTGTAGTGTCTTGATTATGCAGAAAAGTCGCCCAGTGAAGCGGAGACTTGAGTATCAGGGTGCAGAACGGGGCGGCTCTGAAGTCCGTTGGGAAGGGAGTCGGAGTCGAGCTTCAGGCTGCGTCTAGTGGAGAATAAATCATGTGATTGACGGGAGCAGGTCGAGGCAGGTGGACCTAATTTACAAACCTTTGTGTCTCTGATTGTGAGCATATGGCAAGTAGGGTTAATAACTAATCAAGTCAAGGGATTTTAAAGTATAACCTCTAAGGCCAGCTATGTGTATAGAAAGTACTGTAGACTTACTGAGCTCGAGGATCCGCAGCGTCGCTCGTGAAGTGGAAAGGGTCACGTGGCCGAGGACTCGTGGGACGGATGGGTGGATGCATGGTTAGTGTGCCAGCTGGTGTTTCTGTAGCTCTGTGCGTCTGTGCAGGGACGGCCGCCTTCCCCATCATCAGCTCTGTCTTCTGTCTCGTTGTAAGCACTCTAGTTTCAGTGTAAATACCGAAAAGTACTGTGCAGTCttaggattttaaaataacaggTTTAGCAGATGATGTCTGGGACATGTGACTCGAGCCGGGCTGGTCGGCATTATGACTGACCGCTCCATTGCACGCTGGCGCTACGGGGTTGTAATCTGGTACAGAAGGGACCGGGGGCTGGACTCCACGCTGATGGCCGCAGGGTCTCAAGGGGTTCCCTCCACCCGGGCCTTCAGCTACTGATCTGATTTAAAGCTGGTCGGCGTGATCAGAACGTTAGGACATCCATTATTCAAGAGGGAGAACTTCTGGTGCGGTTGTGTACGTTGTGTGAAGTTCTTGAAAGAGGTCCAGTTGGATGGAAAACCCAAAGACCACATGGCCCTCAAGAGTCTGACAGCCCTGAAACTGACCAGATCACATGGAAGAAGCCCCACATAGAGCAAAGAGTTGTCTGTTTACATTGTCGATCTGGCTGAGGATATGCATTTTCCACTACAGTGCCATTGGGAGGGACCAACAGTCAAACCAGgagtgaatgagtgtgtgtgaatgcatatatatatatattttaaagctacaAAGAAAACCACTAAATAAGACCTACATAAGAAGACAGAGGTCTGATAAAGTGCCGTCCAGCTCTGGTGAGACGAGGCGATGAACTTTTCCCCGTAATCgtgagtgaatgagtgtgtgtgatcAGAGCGCAGTAGTGTACAGGGATGCACCGTATATGGAGGGATTGGTCTTCACTGCCCTGTGTAAAATGCCAGACTGGCGCAAGGTGCCCGCTTGCACCGCCTGCCGCGTCAGAGGGCAGGCAGCGGCCATGTGCCGGAGTTTCCCATTGAAACGCAGGCTGTGTAGCGTGTTTAAACCATGAGTGAATTTGATGGCAGTCGTGTCCGGGACTGGATGCATATCTGCATGGACACATTTTTATCCGCTGGCTTTTATGATATGCAATGACTGATCACGATATCAAACGATGCATCACAAACGCTGTGCTTTCATTATTAATGTTGGATTCGGTTGGTTCCTGTCAGTGGTACGTGGTGGCCCGGTTTCGGCagctgtgtgtggctgtgtgtgtgcgccgtGACTCACGCGGGAGGAAGCGGACGCCCAGCCTGTGCCTTTACTCGTATGCTGGTGCGCCCGTCCCTCCTCCAGAAAACCCACCACAAGTTGCATTATTGAGAATGGGGAGCGGGGGGGTCCTTTCAAAGTCCTGTTACGTGTTCTCTGTCCCAGCTTGATCCAGTTTTATATGCAATTAaatggttttcctttttaaaaaaataaattaacaaattctA

Function

symbol description
porb Predicted to enable FMN binding activity; NADPH-hemoprotein reductase activity; and flavin adenine dinucleotide binding activity. Predicted to be involved in response to hormone. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in congenital adrenal hyperplasia and cytochrome P450 oxidoreductase deficiency. Orthologous to human POR (cytochrome p450 oxidoreductase).

NR:

description
PREDICTED: NADPH--cytochrome P450 reductase-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005506 iron ion binding molecular_function
GO:0003958 NADPH-hemoprotein reductase activity molecular_function
GO:0010181 FMN binding molecular_function

KEGG:

id description
K00327 POR; NADPH-ferrihemoprotein reductase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005475 True 4146 mRNA 0.55 15 1036096 1051408

Neighbor

gene id symbol gene type direction distance location
AMCG00005476 mdh2,LOC106908802,LOC103136570 coding downstream 8847 1023035 ~ 1027249 (-)
AMCG00005474 NA coding downstream 14979 1014652 ~ 1021117 (-)
AMCG00005454 NA coding downstream 62377 971671 ~ 973719 (-)
AMCG00005388 NA coding downstream 163091 871157 ~ 873005 (-)
AMCG00005387 tmem132e coding downstream 635299 398920 ~ 400797 (-)
AMCG00005473 NA coding upstream 7845 1059253 ~ 1062795 (-)
AMCG00005389 NA coding upstream 58193 1109601 ~ 1111890 (-)
AMCG00005417 NA coding upstream 247958 1299366 ~ 1300547 (-)
AMCG00005427 ppm1e,LOC102780278 coding upstream 380496 1431904 ~ 1436308 (-)
AMCG00005428 rad51c,LOC107691693 coding upstream 410824 1462232 ~ 1467875 (-)
G152071 NA non-coding downstream 26357 998354 ~ 1009739 (-)
G151979 NA non-coding downstream 345154 690659 ~ 690942 (-)
G151972 NA non-coding downstream 658383 377355 ~ 377713 (-)
G151970 NA non-coding downstream 685774 346997 ~ 350322 (-)
G151957 NA non-coding downstream 703752 242154 ~ 332344 (-)
G152085 NA non-coding upstream 14051 1065459 ~ 1070656 (-)
G152178 NA non-coding upstream 345933 1397341 ~ 1398392 (-)
G152197 NA non-coding upstream 406829 1458237 ~ 1458662 (-)
G152320 NA non-coding upstream 641341 1692749 ~ 1693555 (-)
G152335 NA non-coding upstream 694545 1745953 ~ 1752738 (-)
AMCG00005400 doc2b,LOC105895337,LOC107681901 other downstream 915549 108398 ~ 120547 (-)
AMCG00005399 NA other downstream 936426 94352 ~ 99670 (-)
AMCG00005407 polr2j,LOC107587688 other downstream 969063 62355 ~ 67033 (-)
G152133 NA other upstream 167919 1219327 ~ 1335440 (-)
AMCG00005419 NA other upstream 319934 1371342 ~ 1376473 (-)
G152277 NA other upstream 454532 1505940 ~ 1507628 (-)
G152271 NA other upstream 470334 1521742 ~ 1615497 (-)
AMCG00005461 eif4h other upstream 657275 1708683 ~ 1723500 (-)

Expression


Co-expression Network