AMCG00007224 (tmem41b,LOC106562360)


Basic Information

Item Value
gene id AMCG00007224
gene name tmem41b,LOC106562360
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 7972276 ~ 7984466 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007224
GCAAAAGGTCAAAGTTCACCGATCTGTCACCAGCCAGGAACCGGGCGAAACTTAACACAGACCTCCGGCTTCCTACACGCCTTGTTGAAAACCTTCTTCGGGTTAGACATCTTAAGAGTGAGTGGATTTCTTCCTCAAAAATGGCCAAGAAGCGAAGAGACAGGCGGGAGGTGGACAACATTGCGACAGAATCGACCACGGAAGaggacaggaaaacaaaagaagggGATGCTCTGAAAGcTCCATTGTATTCTGAAGGGGGGTCGGCCCGCCTGTCTCTCCTCATTTTGCTCTCCATTTTCCTGAGTGCTGCTTCAGTCATCGACGAGAGAGAGAAGATGAAAATCCCTAAAGACATGGATGATGCCAAGGCCTTGGGAACAGTGCTGTCAAAATACAAAGACACTTACTACACTCAGGTCCTGATAGCCTACTTCGCTACATATCTCTTCCTCCAGACCTTTGCCATCCCAGGTTCCATCTTCTTGAGTATCCTGTCAGGTTACCTCTACCCATTCCCCCTGGCCCTGTTTCTGGTTTGCCTGTGCTCGGGCCTCGGAGCCTCCTTCTGCTACATGCTGTCATATCTCGTGGGAAGGCCAGTGGTctacaaatatttaacagaGAAGGCAATTAAATGGTCCCAGCAGGTTGACAAGCACAGAGAACATCTAATTAACTACATTATATTCCTGAGGATCACCCCTTTCCTTCCCAACTGGTTCATTAACATCACCTCTCCTGTCATTAATGTTCCCCTTGGGGTGTTTTTTATCGGAACTTTCTTTGGGGTGGCTCCTCCATCCTTCGTAGCCATCAACGCAGGGACAACCCTGTACAAGCTCACCACCGCGGGGGAGGCGGTGTCCTGGAACTCCCTGGCTGTGCTGGGGGTCTTGGCTGTGCTGTCCATTCTGCCCGTCTGCTTCCAGAAAAAACTGCAGCAGAAGCTGGAGTAGAGGATCCCTCCCACCCCCGACCCCTCAGCCCCCTCAGCTCAGCTCAGGATCGGGGCAGGAGTCCGGCCGCTGTCACACTGTCCGTCAGCTCTCCATGAACCACTCAGGTCACTCTGGAAATCCATTGCCAACGGTCCATAGAGCGCTTGCCCACGCCGTTTCTGCGAGGCGTGCAGTTGAGGGAGACCTTTTACAAGCAGAACATCTTGACTGTCCTCTCAGTCAGCCCTGGACTTTACCTTatctgttaattattattatttttaaaatgttttcacactgCAATTCAAAGATGGGGGGGGAAAAAGTGTTGTGCCAAGCGCACTGTGAATAATGACGGTGTAAGATTGTTCAGTTAACTTAAAAGAAGCTACCATcctctgtttccatttttttccctctctctctgatttttaatgctacattttttaaatatttatttcagagacTTGTGTTTGCTGATTGTAATAACTAAATATGCGTAAAGGGAAAGCAATATTTTCAGATTGAGTGttcagtttttacttttgtgtttCGTTTCTTTCCGTTTGTCGACTTTCATGGCAAGCGCCTGGTCAGTGTAGTGCAGGCCTCACAGCTGTCTACGATACACTAGTAaaagtcttatttttttgtcGTTTTGTAATGGAAGTTTCGGTTCAATTTCACGGTTTTCATCGACGGAGAATTGTCTTGTCGCATTTGGTATaaggctatttttttttttttttctttttctttttaatcaagaACATAAATCGTTATTCCATTGTTGAAACTTGAGCATAATTTCCTGCTTGGTTTTGCTTACCTAGCCAAGGAGagttaaaatgaacagaaacagaCGGCTGAGACATCTCTAACCCGTTCTTGTTTATCAACACCATTTACAATAATGAGGAATTCAGTCCTCTTAATTAAGACTATGGGGGTGGGTTGCAATTTATTATATTAGACAAGTCAGTGTTGCCTGCGTCTGAGCTGGTTTATTAGACAATACAGGACATGTGGAGTGACCTGAGAAGTTAATTTATCACCAGGGTGTCTGCCAGTGATTCTGGTTCTAGTCTGATGGATCTCTGTTAAAGCAGAACAGCAGATGCATTTAAGAAAGAggatgtgtgtgggtgtgtgtgggtctcagtgtgaatgtgtgggAAGTTAGCTGGTTGCTCATTTATTAGAGACCTCCAAAATGCTAAAAGAAAATCTACCAATACCATTTCTCCACTTGTGGGATCTGTGTAACATAACGTGGCATTGTATTACCTTGAGTCCTTTGTCAGATCAGTTTTTTGAATTCAATAGTCTTCTCATTGTTACAtttggtatatttattttatttggttacTTGTCTAGTATGATTATTTGTGAATGCTTgtagtttgctttgttttacacttgcattacatgtattttgcagACTAAAAGTGACACAATAGATGTTTACTAGAACAATCATTTAGACCTATATCAAATTATCTACAGTTGAGGGAGGAGATGCAGGCATTTTAGATTATCTGCTGGGATTTACCCCCCTTCGTAAACGATGAAGAGGAAAACAGttggttttaattaacacaCGCTTGGAATGTTTCTACAGCTTTCCAAATGCCGATATGACCGATTTTAATGCTGCCAAGATAACAGCGTGgcacctttttctttttcaagattttgtttgtattgagATCAACTTGGTAAAAATGCACTGAATTGGAAAGTGACTTCTCATCATTAGATATTTGGTGTTTTCCAGCACCTTTAAACCTTATCATGCGTTGCCTTACATCTTGAATTCATCGGAAGTGTAAGTGTGGTTTAGAAAACCTCTTTTTCAATATCAAAGTGTCCTCTCgggtgtttatgtgtgtttattttataaatatatataagcaaGCCAATTAATGCATTTGCCAACAAGGTTTCAGCCAGTTTCAGGTTCAGTTACACTAGTGTCACAATTCTCCATTTTCTTCATTATCACTGCACTCCATCAGTATCAGCACAAGATCCTCATTCTCTTTGTCCTGTTAGAAATGTAGATTACAATGTGACAAGCTTAATCTAATTACAATGAAACAGGGTTtagatgttttatatatatatatatatatatataacatgtcatACTAAACGTATATTGATTCAAAGGCAGAAATATTAGAACTCCATAGATTTTCACTTTCAAGACCACCAGGTGTTTCTTCAGTATACCTCTAAATAGTAGAGACTGCAATATTAAATtggtatttgatttgattttttttttctcctgtaaagTGATGTCATGTGCAAAGGAATGGAATTCTTCCACTGTTCTGTTTGGGCTGTATACCTTATGTAAAACGGTCCTTTTATTATGCTCGGTTAACAACAGTATTAAATTGTACActtgaaaaaaaattaatgttCTGCagtatgatatatatttataaataccatcctttgatcttttttttttccaacttcacaaaaaaatgaatttttattatt

Function

symbol description
tmem41b Acts upstream of or within motor neuron axon guidance. Predicted to be located in mitochondria-associated endoplasmic reticulum membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human TMEM41B (transmembrane protein 41B).

NR:

description
PREDICTED: transmembrane protein 41B

GO:

id name namespace
GO:0008045 motor neuron axon guidance biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007224 True 3455 mRNA 0.41 7 7972276 7984466

Neighbor

gene id symbol gene type direction distance location
AMCG00007225 NA coding upstream 85103 7865378 ~ 7887173 (+)
AMCG00007223 NA coding upstream 127915 7838818 ~ 7844361 (+)
AMCG00007219 rnf141,LOC102797002,LOC100693732 coding upstream 261987 7708259 ~ 7710289 (+)
AMCG00007220 NA coding upstream 267433 7702259 ~ 7704843 (+)
AMCG00007217 NA coding upstream 275671 7680455 ~ 7696605 (+)
AMCG00007234 dennd5a coding downstream 21103 8005569 ~ 8037874 (+)
AMCG00007233 fa60a,LOC108413309,LOC105015234,LOC107562797,LOC107694455 coding downstream 55228 8039694 ~ 8043027 (+)
AMCG00007235 NA coding downstream 65654 8050120 ~ 8071159 (+)
AMCG00007236 NA coding downstream 89302 8073768 ~ 8079862 (+)
AMCG00007237 NA coding downstream 95707 8080173 ~ 8087434 (+)
G22076 NA non-coding upstream 71101 7900779 ~ 7901175 (+)
G22038 NA non-coding upstream 266917 7705148 ~ 7705359 (+)
G22027 NA non-coding upstream 296399 7669719 ~ 7675877 (+)
G21985 NA non-coding upstream 365205 7606579 ~ 7607071 (+)
G21949 NA non-coding upstream 440506 7531563 ~ 7531770 (+)
G22192 NA non-coding downstream 269427 8253893 ~ 8254655 (+)
G22204 NA non-coding downstream 460459 8444925 ~ 8445550 (+)
G22208 NA non-coding downstream 465618 8450084 ~ 8450494 (+)
G22209 NA non-coding downstream 466301 8450767 ~ 8450978 (+)
G22211 NA non-coding downstream 499796 8484262 ~ 8484504 (+)
G21891 NA other upstream 593330 7374323 ~ 7378946 (+)
AMCG00007196 svip other upstream 753801 7211564 ~ 7218475 (+)
AMCG00007160 NA other upstream 2196820 5757677 ~ 5775456 (+)
AMCG00007154 ptpmt1,LOC102795413 other upstream 2300131 5668196 ~ 5672145 (+)
AMCG00007148 NA other upstream 2391982 5565941 ~ 5580294 (+)
AMCG00007232 rpl27a,LOC107687759,LOC107726310 other downstream 162932 8147398 ~ 8183421 (+)
AMCG00007243 rbtn1,lmo1,LOC108713718,LOC107593328,LOC106609843,LOC107725665,LOC107085592 other downstream 382970 8367436 ~ 8396242 (+)
AMCG00007242 NA other downstream 446636 8431102 ~ 8451582 (+)
AMCG00007253 calcb,LOC106584617,LOC104951332,LOC107090894,LOC106922915,LOC106950942,LOC103461098 other downstream 713517 8697983 ~ 8711311 (+)
G22372 NA other downstream 1452058 9436524 ~ 9499728 (+)

Expression


Co-expression Network