AMCG00007233 (fa60a,LOC108413309,LOC105015234,LOC107562797,LOC107694455)


Basic Information

Item Value
gene id AMCG00007233
gene name fa60a,LOC108413309,LOC105015234,LOC107562797,LOC107694455
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 8039694 ~ 8043027 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007233
CGCTGCGGGGACGGGGCACCGTTTCGCGCTTTGCGGGGGAGAGCTGGTTTTGTTTGGCGGATAAACGGAGCCACACAGCGCAGTTTGGAGATGTTTGGCTTTCATAAATCCAAGATCTACCGCAGTCATGAAGGCTGCTGCATCTGCAAGACCAAGTCCTCCAGCTCCCGCTTCACAGACAGCAGCCGATATGAGGAAAACTTCAGACTGTGCTTCGGgTTGGTTGAAGATCGAACAGGAGACATCTGTAACGCTTGTGTTCTGCTTGTGAAGCGTTGGAAGAAACTCCCCCTCGGCTCTAAAAAGAACTGGAACCATGTTGTGGATGCAAGAGCAGGGCCTGGCTTCAAGTTGACGAAGCCCAAGAAGGTGAAGAGCAGTGATGGCAAAAAGAAGAGCAAACTCAAGAAGTTGCACAAATTCAAAAGACAAAACTTCGTTGTGGACGGCTCCAAACCAGGGCAGCGGTCCGCTCTGTTCCAGGTGTCCGTGCGTATCCCATCTCGAAGCTCAACGATCTCGTGCTTTCATTGCCTTTCAGACTCCGATGCCCACAGCACGACGTCGAGCGCCTCCCCGTCTCAGTCTCCCAGTTACAGCAACCGGTCTGACGATGGCTCTGACATAGAGTCCAAGCAGAGGCATCCCACCCCGTCTGTGTTCTCCTTCATAGACCTCTCCTACTGGAAAAGgcaGAAGGTGTGCTGTGGCATTATCTACAAAGGCCGCTTTGGCGAAGTCATGATCGACCCACGCCTCTTTAAGCCGTGCTGCAGCTCCAAGAAGAAGGAGTCCCTGTCACAGGCCGAGGACTCCCCACCGGCCCTGAAGGAGGGGTGGTAATGGGTGCTGGCTGTTCAACTCTCCTCCTAGTTTTGTCTCCAGTGGCAGACTTTCCCCCTCACCCTGTCCCCCATTCCTCAGTCTTTTGTTAACCTTATATCAATTAGCCAGGAATcttttgtttgtcagttttgcatatgtaaattaatttttcagtagttttttattttttttattttttaagaaaa

Function

NR:

description
PREDICTED: protein FAM60A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007233 True 1031 mRNA 0.51 6 8039694 8043027

Neighbor

gene id symbol gene type direction distance location
AMCG00007234 dennd5a coding upstream 1820 8005569 ~ 8037874 (+)
AMCG00007224 tmem41b,LOC106562360 coding upstream 55228 7972276 ~ 7984466 (+)
AMCG00007225 NA coding upstream 152521 7865378 ~ 7887173 (+)
AMCG00007223 NA coding upstream 195333 7838818 ~ 7844361 (+)
AMCG00007219 rnf141,LOC102797002,LOC100693732 coding upstream 329405 7708259 ~ 7710289 (+)
AMCG00007235 NA coding downstream 7093 8050120 ~ 8071159 (+)
AMCG00007236 NA coding downstream 30741 8073768 ~ 8079862 (+)
AMCG00007237 NA coding downstream 37146 8080173 ~ 8087434 (+)
AMCG00007230 tmem9b,LOC107700603,LOC107754675,LOC107585953,LOC107750540,LOC107674442 coding downstream 49002 8092029 ~ 8096182 (+)
AMCG00007231 NA coding downstream 55038 8098065 ~ 8101788 (+)
G22076 NA non-coding upstream 138519 7900779 ~ 7901175 (+)
G22038 NA non-coding upstream 334335 7705148 ~ 7705359 (+)
G22027 NA non-coding upstream 363817 7669719 ~ 7675877 (+)
G21985 NA non-coding upstream 432623 7606579 ~ 7607071 (+)
G21949 NA non-coding upstream 507924 7531563 ~ 7531770 (+)
G22192 NA non-coding downstream 210866 8253893 ~ 8254655 (+)
G22204 NA non-coding downstream 401898 8444925 ~ 8445550 (+)
G22208 NA non-coding downstream 407057 8450084 ~ 8450494 (+)
G22209 NA non-coding downstream 407740 8450767 ~ 8450978 (+)
G22211 NA non-coding downstream 441235 8484262 ~ 8484504 (+)
G21891 NA other upstream 660748 7374323 ~ 7378946 (+)
AMCG00007196 svip other upstream 821219 7211564 ~ 7218475 (+)
AMCG00007160 NA other upstream 2264238 5757677 ~ 5775456 (+)
AMCG00007154 ptpmt1,LOC102795413 other upstream 2367549 5668196 ~ 5672145 (+)
AMCG00007148 NA other upstream 2459400 5565941 ~ 5580294 (+)
AMCG00007232 rpl27a,LOC107687759,LOC107726310 other downstream 104371 8147398 ~ 8183421 (+)
AMCG00007243 rbtn1,lmo1,LOC108713718,LOC107593328,LOC106609843,LOC107725665,LOC107085592 other downstream 324409 8367436 ~ 8396242 (+)
AMCG00007242 NA other downstream 388075 8431102 ~ 8451582 (+)
AMCG00007253 calcb,LOC106584617,LOC104951332,LOC107090894,LOC106922915,LOC106950942,LOC103461098 other downstream 654956 8697983 ~ 8711311 (+)
G22372 NA other downstream 1393497 9436524 ~ 9499728 (+)

Expression


Co-expression Network