AMCG00007235


Basic Information

Item Value
gene id AMCG00007235
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 8050120 ~ 8071159 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007235
ATGGGAGCTGTTTGTTTTGCCCGggacttgtgtttgtttttcctcctgttAAATACCCGTCAAAGCCCTGCAAGTGCAGAGCAGCAAGATGCAGATCAGTGCGCCGAAGACATTGATGCCTGTCATGTAGATGCTATTTGTCACAATTCACCAGCATCTTACAAGTGTACATGTAAATCTGGTTACACAGGAGACGGAAAACACTGTGAAGACATTGATGAATGTGAAATTGAATACAATGGAGGCTGTGTCCATGAATGTAACAACATACCAGGCAATTACCGCTGCCTTTGCCATGATGGGTTCATGTTGGCACATGATGGACACAATTGTCTAGACATGAATGAGTGTGAGTTTAACAATGGAGGATGTCAGCATGTTTGTGTCAACACAATGGGCAGCTATGAGTGTCGCTGTAAGCAGGGCTTCTTTCTCAGTGACAACCAGCACACCTGCATCCATCGCTCTGTAGAGGGGCTCAGCTGTATGAACAGAGATCATGGCTGTGCGCACATTTGCAAGGAGTCGCCGAAAGGAGGAGTTGCCTGTGAATGCAGACCTGGGTTCGAGCTCGCTAGGAACCAGAGAGGCTGCACCCTGACCTGTAACCACGGGAACGGGGGCTGCCAGCACTCCTGTGAGGACGCAGACCTGGGGCCGATCTGTCGATGTCACCAGAAGTTCACCCTGCACTCTGATGGGAAATCGTGCATAGAGAGAGATGAGGCTGCAGCAGAGACCTCAGACAGCAATGCCACTTCACTCGCTGATGTGGACAAACGGGTGAAACGCCGACTGCTCATGGAAACCTGTGCCGTGAACAATGGAGGCTGTGATCGCACTTGTAAAGATACGTCCACCGGTGTCCACTGCAGCTGCCCTGTGGGGTTCACTCTGCAGCCTGATGGAAAGGCCTGCAAAGACATTGATGAGTGTGTGTTCAGCAACGGGGGCTGTGACCAGTTCTGTAGGAACACGATTGGCAGCTTCGAGTGTAACTGCAGGAAGGGATTTAAGCTGCTCTCAGACGAGAGGTCTTGCCAAGATATTGACGAATGCCATTTCGAAAGGACTTGTGACCACACCTGTGTCAATTTCCCAGGTGgctttgagtgtgtgtgtaataaaggATACACCTTGTATGGCCTGGCTCACTGCGGAGATATAGATGAATGCAGCATCAACAATGGGGGCTGTGAGCACACCTGTGAGAATACTGTTGGCGGATTTGAGTGTCACTGCCATGCAGGCTACAAACTGCAGTGGAACAAGAAAGACTGCATCGAAGCAGAGGGTATCGCGGCAGCTAAAGCGCCTTCTAAGCCTACGTTAAACTGCAGCAAGCAGGAAGGAAACGATTGCTGCTTCCTGACTTGCCAGTCCCAGGTGCACATCTTCAGTGGGTCTGAAGATTCTTATACAGTAACCTGTGGAATACCTCTAATTTGCTTCGGGCTGGACTCTACAAGCATTCCACGGATCAAGACAACTGCGACTTTTAAGTCCAGTTCAGGAAAGTGCAATTTGAACAGAAGTCAAGAGAAGCTCAAAGAGGGCTTGAATGCAGCTCTTTCAGACAGAAAAGCTCCATACACTGAGAACGTCCAGTTCAGCTTCGTCAGCCTGCGGTGCAGCTCTGCCAGTAAAAAGCTTCGCAGCCGCCATGGGAGGAAGGCAGGGGAAGAGGAGGGCTCTTCTATTATGGCAGAGTTTGAGCTGGAAATGAATCTAGAGGAGGTAACAGAATCGTGTGACTTGGGGTGCGTGCGCAAACGGTCGGAGAAAAGGCTACGCAAAACCATCCGGACACTTCGGAAGTCCATCCACAGGGAGCAGTTCCATGTGCGCTTTGCTGGGATGGAGTATGAGCTGTcaaagaaagtgtccaaaccCCTGGACCTGCCTGAGCAGTGCGGAACTGGACAGGTGGTAGTGGACAAGAAATGTGTCAGCTGCAGCACGGGCTCCTACCATGACGGAGAGCAAGGGAGATGTATTCTATGTCCTCCTGGAACGTACCAAGACGAGGAGGGGCAGCTGTCGTGCGAGGCGTGTCCGGGTCCCGAGATCCCGGGAATACTCCGGCCTGCAGGGGCACGAAACATCTCCGAATGTGGAGGTTTCATCCTCGCATTTCTCCTGCAATCCTGCTGTCCGCTGCTTTTACTCTGTGAGTCCCCTTGTATTCCGACCAGTCCATGTTTCTACCCCAAGGTCAGTGCCCTCCTGCCCTGTCCACTGGGCTCCTTCCAGCCAGAGATGGGCCGCACCTCCTGCTTTCCCTGCGGGGGCAACCTGGTCACCAAACACGTTGGGGCACTGTCATTCCAGGACTGCGAAACCAAAGTTCAGTGTTCACCAGGCCATTATTATAACACCAGCACACACAGATGCATCCGCTGTCCGACGGGGACCTACCAGCTGGAGTTCGGGCAGAACTACTGTGTGGCCTGTCCAGGAAACACCACCACTGACTTTGACGGCTCAACAAACATAACCCAGTGCAAAAACAGGCACTGTGGAGGAGAACTGGGAGACTTCACTGGCTATATTGAGTCACCAAATTACCCTGGGAACTACCCTGCAAACATTGAGTGTACCTGGACTATCAACCCCCCACCAAAGAGGAGAATTCTCATCGTGGTCCCGGAGATATACCTCCCCATTGAGGATGAATGCGGGGACTATTTAGTGATGAGGAAGAGTTCTTCCTCAAACTCCGTCACTACGTATGAAACCTGTCAGACGTATGAAAGACCGATAGCATTTACCTCGAGGTCCAAGAGGTTATGGATCCAGTTTAAATCTAACGAAGGGAACAGCGGAAAGGGCTTCCAGGTCCCCTATGTTACATATGATGAGGATTACCAAGAGCTTATTGAAGACATCGTCCGAGATGGCAGGTTATATGCATCAGAAAATCACCAAGAAATACTtaagGACAAGAAGCTAATGAGGGCTCTGTTTGATGTCCTGGCACACCCTCAGAACTATTTTAAGTACACAGCACAGGAGTCCCGAGAAATGTTTCCCAAGTCATTCATCCGATTCCTGCGCTCCAAAGTATTAAGGTTTTTGCGGCCTTAG

Function

GO: NA

KEGG:

id description
K24706 SCUBE2; signal peptide, CUB and EGF-like domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007235 True 3087 mRNA 0.51 24 8050120 8071159

Neighbor

gene id symbol gene type direction distance location
AMCG00007233 fa60a,LOC108413309,LOC105015234,LOC107562797,LOC107694455 coding upstream 7093 8039694 ~ 8043027 (+)
AMCG00007234 dennd5a coding upstream 12246 8005569 ~ 8037874 (+)
AMCG00007224 tmem41b,LOC106562360 coding upstream 65654 7972276 ~ 7984466 (+)
AMCG00007225 NA coding upstream 162947 7865378 ~ 7887173 (+)
AMCG00007223 NA coding upstream 205759 7838818 ~ 7844361 (+)
AMCG00007236 NA coding downstream 2609 8073768 ~ 8079862 (+)
AMCG00007237 NA coding downstream 9014 8080173 ~ 8087434 (+)
AMCG00007230 tmem9b,LOC107700603,LOC107754675,LOC107585953,LOC107750540,LOC107674442 coding downstream 20870 8092029 ~ 8096182 (+)
AMCG00007231 NA coding downstream 26906 8098065 ~ 8101788 (+)
AMCG00007244 NA coding downstream 116260 8187419 ~ 8205121 (+)
G22076 NA non-coding upstream 148945 7900779 ~ 7901175 (+)
G22038 NA non-coding upstream 344761 7705148 ~ 7705359 (+)
G22027 NA non-coding upstream 374243 7669719 ~ 7675877 (+)
G21985 NA non-coding upstream 443049 7606579 ~ 7607071 (+)
G21949 NA non-coding upstream 518350 7531563 ~ 7531770 (+)
G22192 NA non-coding downstream 182734 8253893 ~ 8254655 (+)
G22204 NA non-coding downstream 373766 8444925 ~ 8445550 (+)
G22208 NA non-coding downstream 378925 8450084 ~ 8450494 (+)
G22209 NA non-coding downstream 379608 8450767 ~ 8450978 (+)
G22211 NA non-coding downstream 413103 8484262 ~ 8484504 (+)
G21891 NA other upstream 671174 7374323 ~ 7378946 (+)
AMCG00007196 svip other upstream 831645 7211564 ~ 7218475 (+)
AMCG00007160 NA other upstream 2274664 5757677 ~ 5775456 (+)
AMCG00007154 ptpmt1,LOC102795413 other upstream 2377975 5668196 ~ 5672145 (+)
AMCG00007148 NA other upstream 2469826 5565941 ~ 5580294 (+)
AMCG00007232 rpl27a,LOC107687759,LOC107726310 other downstream 76239 8147398 ~ 8183421 (+)
AMCG00007243 rbtn1,lmo1,LOC108713718,LOC107593328,LOC106609843,LOC107725665,LOC107085592 other downstream 296277 8367436 ~ 8396242 (+)
AMCG00007242 NA other downstream 359943 8431102 ~ 8451582 (+)
AMCG00007253 calcb,LOC106584617,LOC104951332,LOC107090894,LOC106922915,LOC106950942,LOC103461098 other downstream 626824 8697983 ~ 8711311 (+)
G22372 NA other downstream 1365365 9436524 ~ 9499728 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_034786 scube2 coding NC_007118.7 CM002891.2 28569266 ~ 28611145 (-)
grasscarp (Ctenopharyngodon idella) CI01000026_04038343_04060958 SCUBE2 coding CI01000026 null 4037500 ~ 4060958 (-)