AMCG00007236


Basic Information

Item Value
gene id AMCG00007236
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 8073768 ~ 8079862 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007236
GGATGAGAgagtgttttgtcttttgtatatTAGTCTTACATGGAAGACACCATTTGTTAAGTAAGATAGAAACTATCGAGAAACTCCTGTAGAAAGCACAATGTTTGCATCTTGTGTGATCATATCGTGTTCTCATCTTGCTTAGAGAATTAAAGAGATAAAAAATGCAGTGTAAGCAATTACTTTTGTGCACAATGGAGTTAGATTGCTTTCTTATCTTAGCTTCAATTAATCGGTGTCTGATGACAGTCCTCATATTTTCATGCTTTGGAAAAAGTGCGAAACACACGTTTTAAATACCATGGAGAATCAAGAAAATGAAGAAAATGGGGCAGACCTGGATGACAGTCTGACTAATATTAACTGGCTTGGAAGGTTCTCTTGTACCGGTATGGTTCCAGAGAAAAAGAAGGCATCCCCAAAAATCAAGaCCGTGAAGCCTCCAAAATGTCCTTCACTTAAGCGTCCTCCATATTCTTATTCAGAGCTTATTAAGCTGGCTCTAAATAGTGCTCCTGGAAAACGTCTGGCTCTCCCACAGATCTACGCCTGGGTGCAGGACCATTTTCCATATTACAAATACTGTGCCAATCCTGGGTGGAAGAATTCCATCCGACACAGTCTGTCAATCCGGGACATCTTCGTACGCGAGACCGAAAACAGTGGAAGAACCTCCTTTTGGACCATGAAAGCCAATACTGAACCAGATATCCTTCCATCACTAAAGCAGATTAATACTGGAGTTCCAAAAAtgccaaatgaaaaaaaagTCTTCATAAACCCCCCTGCCTTCTGTCAGGCATCCGTGGCACCCCACCGCCCCACTTTCAACACCCAGGCTACCACCGTACAGAGGGTTATTGTTCCGAAGCTCCCTATATCCAGAGGGATCCATACTGTAGTTAGTTCTCAAGTACCTGCACTAACCAACACGGTGTCGAGGGAGTCAACCATAGCAAAGCACCAGAATAAATGCCCTCCGCAGAGGCCCCGTCTGAAACGGAAGCAGAAACACCAGACACTGAAGGAGCCTGAGCCGCTGTTGCAGGACACGCCTGGCTTATCAAATGACTCGGGTGTAGACAGCGAAAGAAACATTTCTTCAGAAGAGAAGACAGACAGTGGGGTATTCAGTTCATCTCCTTTTAAGACTCCTACTAAGAAGAAAATGGAGGTCCTAACCACGTCAACACCGTGCACCAACTCTGCGTTACTCTCCCCCAATGTCTCTCTGCAGATGGGGGACACCCCTCCAAAGTCTCTGGATAGTTTTCTTGATGGCAGTTTCTTTAAGTCTCCAGATGCTGTGAGTCTGGGTTATGAAAGTCTTGGCTTTGCACCCCTCAGGGAAAATGCCAAATCCAGTCATGAGAATAataacagtgagagagagttgTCGGAGTTCACGTTCCTTGGATTCACTCCCATTAAAGGAGCCAGAGTGACGGAGGGACCGGGCTTTGAGCACAAGAGTGAAAGCGTCTTTGCTGACTTCACACTTCCAGACATTGAAGAGGGAACTGACATGGCCAGCATCAGCTGGTCAGCATTTGCATCGGACTGTCAGTGACTGTGCTCTGCATCACAACACATCTGTTAATTATATAACCATATTGTATAGGAACAATAATGGAGGTATGCTGTCCAGTAAGAATtaagaaattatattattgtactATAATGTTGTGaagattattttgttgtaaatagAAAAAATTATTTAGGAGAGtctcaaattatgtttattaaatgGGGGGGATGCACTATggccagaaaataaataaatctatcatCGTGCAAAAACAAGTGCTGcaatttgtgtgcatttgtcCCAATGTCATACTTCTCTATTGCTTCTTCAAAATGGGTACCATGGCTGAATGTATGTGTTTGGAATTGGTGTTATAAAACCTCACTGTTACAGCAGATTGTGTAATTGTAGTACACCAAGTTAATTTTGATTAGAtaaactgttattttgtatattctATTTAAATTGATGTGGCTTTTAATTGCTGCCCTACATAATCACCAGCATGAATCTCAAGAGCTCACTTCATGTGGATTAACTGCCAATTTCCTCTTTCCCAGTTCGGTGGTGCTCTATACCAAGCTTAGTTTGTCCTTCATGGCATCACGGTCAAAGACCTTTCAGCACTTCAGTCTGACTAGATCAAGGTTGCGCCTTAACTCGGGGAGAAAAGAATACaggatacatttgaaaaattgGTTCcatcttgtgtttttgtctaTTCGGACAGACTTGTCTTGTATTAGAAGTTCTTGCTGCCCTTTATGTGGTCTTGTTTTCACATGTAAAAGTACGTTGGTTACAGATCTGCACAATTTTCCTGTACAGCACTCCTTTTATAGCAAGATACTCTACTATGTTATCAGTTTATTGAATGGTTAAACTGTACAATAAATGTGTCCATGAAAATGATGCATTCTTGTGGATagcttaaaatgtatacaatgcacaatacagtacattaa

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0006259 DNA metabolic process biological_process
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
ko04110 Cell cycle
ko04114 Oocyte meiosis

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007236 True 2496 mRNA 0.41 8 8073768 8079862

Neighbor

gene id symbol gene type direction distance location
AMCG00007235 NA coding upstream 2609 8050120 ~ 8071159 (+)
AMCG00007233 fa60a,LOC108413309,LOC105015234,LOC107562797,LOC107694455 coding upstream 30741 8039694 ~ 8043027 (+)
AMCG00007234 dennd5a coding upstream 35894 8005569 ~ 8037874 (+)
AMCG00007224 tmem41b,LOC106562360 coding upstream 89302 7972276 ~ 7984466 (+)
AMCG00007225 NA coding upstream 186595 7865378 ~ 7887173 (+)
AMCG00007237 NA coding downstream 311 8080173 ~ 8087434 (+)
AMCG00007230 tmem9b,LOC107700603,LOC107754675,LOC107585953,LOC107750540,LOC107674442 coding downstream 12167 8092029 ~ 8096182 (+)
AMCG00007231 NA coding downstream 18203 8098065 ~ 8101788 (+)
AMCG00007244 NA coding downstream 107557 8187419 ~ 8205121 (+)
AMCG00007245 rergl,LOC104925113 coding downstream 137716 8217578 ~ 8221636 (+)
G22076 NA non-coding upstream 172593 7900779 ~ 7901175 (+)
G22038 NA non-coding upstream 368409 7705148 ~ 7705359 (+)
G22027 NA non-coding upstream 397891 7669719 ~ 7675877 (+)
G21985 NA non-coding upstream 466697 7606579 ~ 7607071 (+)
G21949 NA non-coding upstream 541998 7531563 ~ 7531770 (+)
G22192 NA non-coding downstream 174031 8253893 ~ 8254655 (+)
G22204 NA non-coding downstream 365063 8444925 ~ 8445550 (+)
G22208 NA non-coding downstream 370222 8450084 ~ 8450494 (+)
G22209 NA non-coding downstream 370905 8450767 ~ 8450978 (+)
G22211 NA non-coding downstream 404400 8484262 ~ 8484504 (+)
G21891 NA other upstream 694822 7374323 ~ 7378946 (+)
AMCG00007196 svip other upstream 855293 7211564 ~ 7218475 (+)
AMCG00007160 NA other upstream 2298312 5757677 ~ 5775456 (+)
AMCG00007154 ptpmt1,LOC102795413 other upstream 2401623 5668196 ~ 5672145 (+)
AMCG00007148 NA other upstream 2493474 5565941 ~ 5580294 (+)
AMCG00007232 rpl27a,LOC107687759,LOC107726310 other downstream 67536 8147398 ~ 8183421 (+)
AMCG00007243 rbtn1,lmo1,LOC108713718,LOC107593328,LOC106609843,LOC107725665,LOC107085592 other downstream 287574 8367436 ~ 8396242 (+)
AMCG00007242 NA other downstream 351240 8431102 ~ 8451582 (+)
AMCG00007253 calcb,LOC106584617,LOC104951332,LOC107090894,LOC106922915,LOC106950942,LOC103461098 other downstream 618121 8697983 ~ 8711311 (+)
G22372 NA other downstream 1356662 9436524 ~ 9499728 (+)

Expression


Co-expression Network