AMCG00007400


Basic Information

Item Value
gene id AMCG00007400
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 17578259 ~ 17583440 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007400
ATGGAGGCGGTGGCCGGCCTGGTGTCTCACACTGTGGCCAAACTTCTGCTGCTTTCCGGCCTCTCTAAAGGAGGGGATGCGAAGAGAGACACAAAGATGGAAGACAAGGCTTTAGAAGTTTATGAGAAATGTGTTGAGGTCCAGGAGGTAGGGGATGATGAATACCTCATCATCATCAAGTTCTGCCCCACAGTGCCCCACTGCTCTCTGGCGACGCTGATCGTTAATAAGCAGATCAATGACAAGGAGAGAGTGGCGGCTGCGATGGAGAACCCGAACCTCCGTGAGATCGTGGAGCAATGTGTCCTGGAGCCTGACGACTGAGCGCTGGAACACACCAGGAGATGCTCCAGTCTCttcttaaataacatttttttcattatgttcAGTTAACGGATACATATTATCTTGTGACTAAGTAGACCAATCAGAAGTGGGAGAAGGTTCACACTGGAGTGCCTTCAGCCTGCTTTCGGTGTGGAGATCAGGACGGTGCTGAGGATCGCAGAGCTCCTCCTCAGACCAGCTGTTCTCCAGCTCTGCTCTGTCAGAAGGAAGTAGCTGCAAACAACCACACAACTCCATGTGttaaggtgtttttttctgctctgAGGTATCTGCAGTAGAAAGAGGATCACCCGCCACAGTATCTACACTGAAGAAGATCAGGGCTGTTTGAGGCAAACTGTAAATGGtatattaggaaaaaaaaaaaatgttgtgaatCTCAAATCATTGGCTGCTCTTTCCTGTGGAAGGTTATGAAGCCCCCATTTAGCCTCCTCTGAATGGAGTTGTGCTGCTCCAGCTGTGCGGAGCCCAGTGAGTGCGCACTCGCCACAGACGTCACCACGGCCTAACCCTGACCACCGCTGATGCCGTGGTGacgtctgtgtctgtctttaaaCTGTGCTGCCTTGCGCACAACCTAAGGAGGAATGCGCCAGGTAATGGGGAAACAAATGATCAATTCCCTTCATCCTCTCTCTCGATCAGTCACCCATCTAGAAAATAGGAGATTTGGTCATTTAATTTGTTGAGTATGCTCCTATTGCCAATCTACAGAAAAATGTTATTCCTTTACATTGCCATATTCTAAACAACATAATGTGAGGTTTTTACATAGGACAGTATTTGCCAATGTTTTTgactaaaaatattaaaaattcagTACTgactacagtatatatatatatatatggtcatACTTTCTCAAAGCCAttaattactaatttatttttcttcaaattgtAGATTTTCCATAGTCCGTTAAAAACTGATTTCAAAGTCTTCAATCCATGTATGtggatttttaatttctttctatatttctttatttaaaacctCAGATTCaactgatttataaaaaaaaaaattaacaaaggaactataaaataaaatgattttttatGGTGCAACTTTTAAGTAGTAGGTAATTGTCTATTATAATTTCATTATCTGATCAAAGGGCACCTTTGTTCACTGCAggttttaattcaatttcatgTAGGATTTACTTTGATTCAGTTCTTTGTCCTGTTTTTCCTCTTGTGCAGCTCAAAGTCCATTATGAAACTGCATCGAGGAGCAAAGGTCTTACTGGGTCAGCTGGTCATAAGGGGGTATTAAATGGTTTTCAAAAAATATGCTGGGGAGGTAAAATTGTTTCTGGGCATGAAATACACCTTTTGCATCATTGATCACATAGTTttgcataaatataatttacttgAATGGTTCAAGTCTCAAGTTTGAGTACTTTAAAAagtcttattttgtttctgcattcAGTGCATTGCAATCTAACTTATCATCCTATATCTTGATGCCGCTTACATTTCCACATGTCAACAGCAAGGGGAAACAATGTACATTATTCACCCCTGACACAAAATGGCAAATTAACAAAGTGAGGATTCAAGTCCTTGTATCAAAGTGATTAGTGAATGAGGAGTATCTCTTAAATTGAACAATGGTATGATTATTACACAGGACAAGCACATTGCTATTTGTTTACTCCTGCTTGAATTGGATTAAATAGActatttaaaatttgaa

Function

GO: NA

KEGG:

id description
ko03050 Proteasome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007400 True 2058 mRNA 0.40 3 17578259 17583440

Neighbor

gene id symbol gene type direction distance location
AMCG00007395 NA coding upstream 6709 17560978 ~ 17571550 (+)
AMCG00007396 ppp6r3,LOC107714032 coding upstream 67297 17492509 ~ 17510962 (+)
AMCG00007398 lrp5,LOC106560964,LOC106573620 coding upstream 103381 17458080 ~ 17474878 (+)
AMCG00007397 lrp5,LOC106573620,LOC106560964,LOC107720507 coding upstream 135052 17424426 ~ 17443207 (+)
AMCG00007394 NA coding upstream 166891 17387943 ~ 17411368 (+)
AMCG00007402 LOC105013640 coding downstream 68191 17651631 ~ 17652812 (+)
AMCG00007403 morf4l1,LOC107596963,LOC107686360,LOC107738770 coding downstream 76242 17659682 ~ 17675554 (+)
AMCG00007404 NA coding downstream 117720 17701160 ~ 17729279 (+)
AMCG00007407 anp32a,LOC107700478,LOC107740437,LOC107557695 coding downstream 470655 18054095 ~ 18058956 (+)
AMCG00007408 NA coding downstream 478794 18062234 ~ 18063493 (+)
G23540 NA non-coding upstream 86498 17491445 ~ 17491761 (+)
G23538 NA non-coding upstream 90859 17487117 ~ 17487400 (+)
G23515 NA non-coding upstream 98510 17474963 ~ 17479749 (+)
G23497 NA non-coding upstream 225469 17352572 ~ 17352790 (+)
G23449 NA non-coding upstream 529941 17047930 ~ 17048318 (+)
G23610 NA non-coding downstream 237407 17820847 ~ 17821117 (+)
G23604 NA non-coding downstream 238326 17821766 ~ 17823337 (+)
G23628 NA non-coding downstream 321118 17904558 ~ 17904949 (+)
G23631 NA non-coding downstream 359336 17942776 ~ 17943110 (+)
G23634 NA non-coding downstream 369111 17952551 ~ 17953275 (+)
AMCG00007379 NA other upstream 915559 16624390 ~ 16662700 (+)
AMCG00007350 tsg101 other upstream 2198294 15366661 ~ 15379965 (+)
AMCG00007352 NA other upstream 2290299 15276711 ~ 15287960 (+)
AMCG00007337 NA other upstream 3088567 14478673 ~ 14489692 (+)
AMCG00007307 clg19h11orf96 other upstream 6965155 10611196 ~ 10613104 (+)
AMCG00007417 NA other downstream 615178 18198618 ~ 18201960 (+)
G23698 fem1b other downstream 623638 18207078 ~ 18208308 (+)
AMCG00007414 NA other downstream 634290 18217730 ~ 18224936 (+)
G23724 NA other downstream 706668 18290108 ~ 18292338 (+)
AMCG00007433 NA other downstream 983802 18567242 ~ 18570472 (+)

Expression


Co-expression Network