AMCG00008077 (oprl1,LOC106572940,LOC107681404)


Basic Information

Item Value
gene id AMCG00008077
gene name oprl1,LOC106572940,LOC107681404
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 41558420 ~ 41563189 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008077
ATGTATAGCAATTCATTCAAAGTGAAAAGAGGGAACAAAAGGCTGAAGGTAAATTTGGCTCATGTTGCAGTGAGGATATCTGGGCATTTCAGTGACTTGGTTTGTATGGAAACGGATTTCATTGTGACGCGCTTCATGGTTGCTCCTGTTGTTGTTTGCAGGTACACAAAGATGAAGACTGCCACCAACATCTACATCTTCAACCTGGCGCTCGCTGATTCCCTGGTTCTCATCACGCTACCGTTCCAAGGCACTGATGTTTTCCTGGGCTTCTGGCCATTTGGTAACCTGCTGTGCAAGATAGCGATCTCCATCGATTACTACAACATGTTCACCAGCACCTTTACCCTCACCATGATGAGCGTCGACCGCTACATCGCTGTCTGTCACCCCGTCAAAGCCCTCGACATGAGGACCCCCCACAAAGCCAAGGTCATCAACATCTGCATCTGGGCCCTGGCATCTGCCATCGGTATCCCTGCCATGGTGATGGGAGCCGCAGAGGACGAGCTGATTGGCATTGAGTGCATTATAGTTCTGCCTCATCCCCGCAGCTACTCGGACCCAGTGTTCGGCATGTGTGTCTTTCTCTTCTCCTTTGTCATCCCTGTGGCCATCATCACTGTGTGCTACAGCCTGATGGTCAAGAGGCTGAAGAACGTGCGCGTGCTCTCGGGCTCCAAGGAGAAGGACCGGAACCTGCGGCGCATCACGCGCATGGTCCTGATCGTGGTGGCCGTGTTTGTGGTCTGCTGGACGCCCATCCAGCTCATGGTGCTGGTGCGCTCTCTGGGGGTCAACCTGGACAACGAGCTGACGGTGGCCCTCATGCACTTCTGCATCGCCCTGGGCTACGTCAACAGCAGCCTGAACCCCGTCCTCTACGCCTTCCTGGACGAGAACTTCAAGCGCTGCTTCCGGGAGTTCTGCTACCCCTCCGCCTTCCGCATGGAGCTGCAGCAGTCGAGCCGCATGAGGAGCATCGCCAAGGAGGTGGCCTACAACTGCAAGAACGCCGACGGGACTAGCAACCCCGCATGA

Function

symbol description
oprl1 Enables neuropeptide binding activity and nociceptin receptor activity. Predicted to be involved in neuropeptide signaling pathway and sensory perception of pain. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Is integral component of plasma membrane. Is expressed in brain; digestive system; gill; heart; and muscle. Orthologous to human OPRL1 (opioid related nociceptin receptor 1).

NR:

description
PREDICTED: nociceptin receptor-like isoform X1

GO: NA

KEGG:

id description
K04216 OPRL1; nociceptin receptor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008077 True 1041 mRNA 0.55 2 41558420 41563189

Neighbor

gene id symbol gene type direction distance location
AMCG00008070 NA coding upstream 201587 41350428 ~ 41356833 (+)
AMCG00008065 adrm1,LOC103354471,LOC107727009,LOC105894265 coding upstream 429546 41123903 ~ 41128874 (+)
AMCG00008064 osbpl2b,LOC107727008,LOC107666451,LOC107681391,LOC107705692 coding upstream 439460 41111056 ~ 41118960 (+)
AMCG00008060 NA coding upstream 544547 40993721 ~ 41013873 (+)
AMCG00008059 NA coding upstream 582536 40963149 ~ 40975884 (+)
AMCG00008081 LOC108440949,LOC107690850 coding downstream 206761 41769950 ~ 41789678 (+)
AMCG00008080 pcmtd2,LOC102294427,LOC108440950,LOC103371493 coding downstream 237060 41800249 ~ 41812742 (+)
AMCG00008083 NA coding downstream 258479 41821668 ~ 41821994 (+)
AMCG00008084 NA coding downstream 263551 41826740 ~ 41832892 (+)
AMCG00008082 NA coding downstream 270073 41833262 ~ 41846010 (+)
G28303 NA non-coding upstream 169636 41388583 ~ 41388784 (+)
G28301 NA non-coding upstream 180127 41378051 ~ 41378293 (+)
G28300 NA non-coding upstream 186599 41370866 ~ 41371821 (+)
G28299 NA non-coding upstream 189780 41366726 ~ 41368640 (+)
G28298 NA non-coding upstream 191801 41364595 ~ 41366619 (+)
G28327 NA non-coding downstream 132165 41695354 ~ 41695708 (+)
G28329 NA non-coding downstream 165023 41728212 ~ 41728433 (+)
G28332 NA non-coding downstream 283803 41846992 ~ 41936214 (+)
G28394 NA non-coding downstream 414070 41977259 ~ 41980084 (+)
G28416 NA non-coding downstream 543678 42106867 ~ 42110075 (+)
AMCG00008051 kif3b,LOC106572821,LOC106566426 other upstream 836675 40663972 ~ 40721745 (+)
AMCG00008036 fkbp1ab,fkbp1a,fkb1a,LOC105013763,LOC108435222,LOC107707744,LOC100705189,LOC107657066,LOC101476936 other upstream 1311182 40241312 ~ 40247238 (+)
G27974 NA other upstream 1499034 40056632 ~ 40059386 (+)
AMCG00008020 NA other upstream 1723468 39817027 ~ 39834952 (+)
AMCG00008010 NA other upstream 2012813 39540220 ~ 39545607 (+)
G28395 NA other downstream 429670 41992859 ~ 41993377 (+)
AMCG00008102 prpf6,LOC107673318,LOC107705744,LOC102793577 other downstream 850443 42413632 ~ 42437228 (+)
G28636 LOC105922603,LOC105919618,LOC107100266,LOC103465560,LOC103147358,LOC102223196,LOC106964922,LOC106524088,LOC108244412,LOC107655056 other downstream 1542524 43105713 ~ 43108242 (+)
AMCG00008120 NA other downstream 1581616 43144805 ~ 43156072 (+)
AMCG00008132 NA other downstream 1729407 43292596 ~ 43305530 (+)

Expression


Co-expression Network