AMCG00008251 (arfgef2,LOC106532188)


Basic Information

Item Value
gene id AMCG00008251
gene name arfgef2,LOC106532188
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 48235687 ~ 48275348 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008251
GATGGTTCTGTTGTTCCACCCAAAGCTAACTACATTGAAGCTGATAAGTATGTCCTTCCATTTGAGCTGGCCTGTCAATCAAAATCCCCCCGAGTGGTCAGCACCTCCCTGGACTGTCTACAGAAGCTTATAGCTTATGGTCACATCACGGGCAATGCCCCAGACAGTGGGGCCCCAGGCAAGAGGCTAATAGACAGGATTTTGGAAACTGTCTGTAACTGTTTCCAAGGACCACAGACAGATGAGGGGGTCCAGCTACAGATTATTAAGGCACTTCTGACTGCAGTGACTTCTCCTCACATTGAAATCCATGAAGGAACTATTCTGCTGACAGTGCGGACTTGTTACAATATCTACCTAGCCAGCAAAAACCTCATCAATCAAACCACAGCCAAAGCCACGCTGACCCAAATGCTCAACGTCATCTTTGCACGGATGGAGAACCAAGCGGGTAGATACCGGCAACAACTGCAGCAGTCTCCTGTCACGGCCCCTGCTAGCAGCTCTCCCAGATTGGACTGCCCTGCAGAGCTGGAGCCCCCAAGGCCCCCCActccccagcccagcccagaaACAGACGGTAACACAACAGATGAGCACCACAGCCCCGAGCCCTCCACAGAGCCAGCCTCTCACAATGACTCGGAGCACTTCAATGGAGAGATGGAGGAAGGAGGTTCAGAGAACGTAGCTGCCCAGGACCAGACAAATTGCAGTCCacaagAAATTCCTAATGAAGATCCACATATTGCACAAGAGTTTTCGTCGGAGAGTCAGGAATCCTACACAGCAGCAGGAAAAGATGTAGAAGAGACTGTGGCTGACTGTGAAAAGCAAGTCCCAGAAATCAAAGATTTAGTGCCCCCATCTGGAAGAACTGAGACTGTTCAAACAAATGGCATCGTGGACGATCGCACATCAGTGTCCTCTACTGACATCTTGGATACAGATGCGGTTCATGGCCCTCCTTCAGCCAGGTTCTCTCACATTCTCCAGAAAGATGCCTTCCTGGTCTTCAGGTCTCTCTGTAAACTATCCATGAAGCCGCTGGCCGATGGACCCCCAGACCCAAAGTCCCATGAGCTCCGGTCGAAGGTGGTTTCCCTGCAGCTCCTCCTGTCGGTTCTCCAGAGTGCGGGCCCCGTGTTTCGAACACATGAGATGTTTGTCAATGCCATCAAGCAGTACCTTTGTGTGGCCTTGTCCAAGAATGGCGTTTCCTCTGTGCCTGATGTATTCGAGCTCTCCTTAGCCATTTTCCTCACTCTATTGTCCAATTTCAAGATACACCTTAAAATGCAAATAGAGGTTTTCTTCAGAGAAATCTTTTTGACCATCCTGGAGACGTCTTCAAGTTCATTTGAGCACAAGTGGATGGTCATTCAGACACTAACCAGGATTTGTGcagATGCCCAGTGTGTGGTGGATATCTATGTAAACTACGACTGTGATTTAAATGCTGCTAATATTTTTGAGCGGCTTGTAAACGACCTGTCGAAAATTGCCCAAGGGAGAAGCGGTCAGGAGCTTGGAATGACCCCTTTACAGGAGTTAAGCTTAAGGAAGAAAGGTCTTGAATGTCTGGTGTCCATTCTGAAGTGTATGGTGGAATGGAGTAAAGACCTGTATGTCAATCCAAATCTACAGGCTAACCTTGGCCAGGAGAGGTCATCTGAACTGGAGAGTGCAGAGAACAAGCCCCTGGACTCCCTGGCACGTAGAGACAGTGCCAGCTCACTGGACTCCACTGTGTCCTCTGGCATCGGCAGCAGCGGGACCCATGCCTCCCTGGCAGATGACCCTGAGCAGTACGAGGTCATCAAGCAGCAGAAGGAGATCATTGAGCATGGCATCGAATTGTTTAATAAGAAACCAAAGAGAGGGATTCAGTACCTGCAGGAACAGGGAATGCTGGGAGTGACACCAGAAGATATTGCACAGTTTCTGCATCAAGAAGAGCGGTTGGACACGACACAAGTGGGGGAGTACCTGGGGGAAAATGTCCGCTTCAACAAGGAGGTGATGTACTCCTACGTTGACCTGCTAGATTTCTGTGGGAAAGACTTTGTGTCAGCTCTGCGCATATTCCTCGAAGGTTTCCGCCTGCCTGGTGAGGCACAGAAAATCGACCGGCTGATGGAGAAATTTGCCGCTAGATATCTGGAGTGCAATCAGGGGCAAACTCTCTTTGCAAGTGCAGACACAGCTTATGTTTTGGCATACTCCATCATCATGTTAACCACAGATCTTCATAGCCCTCAGgttaaaaataaaatgaccaaGGAGCAGTACATCAAAATGAATCGGGGAATCAATGACAGCAAGGATCTGCCCCAAGAGTATCTCTCTGCAATATATGATGAGATTGCTGGCAAGAAAATCGCAATGAAGGAGAGCAAAGAGTATTCAATCACACCAAAGTCCAGTAAACAGAATGTGGCCAGTGAGAAGCAGAGGAGGCTGTTGTATAACTTGGAAATGGAACAAATGGCAAAAACAGCCAAAGCGTTAATGGAAGCAGTAAGCCATGCACAGGCCCCCTTCACCAGCGCCACCCACCTGGAGCACGTTAGACCCATGTTCAAACTGGTGTGGACCCCCCTGCTCGCTGCCTTCAGTGTGGGCTTACAGGATTGTGATGACCAGGAGGTGGCTTCCCTGTGCCTGGAGGGGATCCGATGTGCTcTTGAGAGAGATGCATACATTCAGGCTCTGGCTCGCTTTACTCTGCTAACAGCCAGTTCCAGCATCACAGAGATGAAACAGAAGAATATTGATACTATAAAGACACTGATCACAGTGGCCCACACTGATGGCAACTACCTTGGAAATTCTTGGCACGAGATCCTTAGATGCATCAGTCAGCTGGAGTTGGCTCAGCTGATTGGAACAGGTGTGAAGACGCGCTACATCTCCGGGGTGGTCCGGGAAAGAGAGGCCAACATTAAAGGGTTCCCATCAGGCAGTGAAGAGTTCATGCCTTTAGGTCTAGggAATCTTGTAGGTGGTCCAGATAAGAAGCAGATGGCCAGTATTCAGGAGTCAGTGGGAGAGACGAGTTCCCAGAGTGTGGTTGTGGCAGTCGACAGAATATTCACGGGATCTACAAGACTAGATGGAAATGCAGTTGTTGATTTTGTGCGTTGGCTGTGTGCGGTGTCGATGGATGAGCTGGCCTCCCCTCACCATCCTCGGATGTTCAGCCTGCAGAAGATTGTAGAGATCTCCTATTACAACATGAACCGCATCCGACTGCAGTGGTCAAGGATCTGGCAGGTCATTGGGGATCACTTCAATAAGGTGGGGTGCAACCCTAATGAGGACGTAGCAATTTTCGCAGTAGACTCTCTGAGGCAGCTGTCCATGAAGTTCTTGGAGAAAGGAGAGCTGGCAAACTTCCGCTTCCAGAAGGACTTCCTGCGG

Function

symbol description
arfgef2 Predicted to enable guanyl-nucleotide exchange factor activity. Acts upstream of or within with a positive effect on angioblast cell migration and cell migration involved in sprouting angiogenesis. Predicted to be located in Golgi apparatus and perinuclear region of cytoplasm. Is expressed in brain. Human ortholog(s) of this gene implicated in periventricular nodular heterotopia. Orthologous to human ARFGEF2 (ADP ribosylation factor guanine nucleotide exchange factor 2).

NR:

description
PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008251 True 3423 mRNA 0.50 24 48235687 48275348

Neighbor

gene id symbol gene type direction distance location
AMCG00008246 NA coding upstream 168144 48042746 ~ 48067543 (+)
AMCG00008247 LOC107565828 coding upstream 204958 48015100 ~ 48030729 (+)
AMCG00008248 NA coding upstream 233747 47955034 ~ 48001940 (+)
AMCG00008243 slc35c2,LOC105890624 coding upstream 327375 47895918 ~ 47908312 (+)
AMCG00008239 NA coding upstream 422597 47801098 ~ 47813090 (+)
AMCG00008252 cse1l coding downstream 17291 48292639 ~ 48326138 (+)
AMCG00008253 stau1 coding downstream 72399 48347747 ~ 48376071 (+)
AMCG00008250 NA coding downstream 186945 48462293 ~ 48474532 (+)
AMCG00008262 stk35,LOC105016730,LOC106583621,LOC103372836,LOC104935842 coding downstream 648516 48923864 ~ 48940095 (+)
AMCG00008272 NA coding downstream 1193941 49469289 ~ 49471615 (+)
G29546 NA non-coding upstream 98963 48136469 ~ 48136724 (+)
G29431 NA non-coding upstream 619756 47613501 ~ 47615931 (+)
G29425 NA non-coding upstream 629262 47605140 ~ 47606425 (+)
G29424 NA non-coding upstream 633001 47602218 ~ 47602686 (+)
G29423 NA non-coding upstream 634586 47600820 ~ 47601101 (+)
G29612 NA non-coding downstream 139655 48415003 ~ 48419063 (+)
G29615 NA non-coding downstream 153627 48428975 ~ 48429218 (+)
G29661 NA non-coding downstream 398900 48674248 ~ 48676139 (+)
G29675 NA non-coding downstream 486624 48761972 ~ 48762297 (+)
G29677 NA non-coding downstream 487337 48762685 ~ 48803905 (+)
AMCG00008249 NA other upstream 293933 47929667 ~ 47941754 (+)
AMCG00008241 LOC106596195,LOC106601018,LOC105896344,LOC105896343 other upstream 317559 47913868 ~ 47918128 (+)
AMCG00008242 hsp70.2,LOC108441608,LOC105896344,LOC105896343 other upstream 343616 47863569 ~ 47892071 (+)
AMCG00008238 hsp70l,hsp70.3,LOC105896343,LOC105896344 other upstream 519105 47664517 ~ 47716582 (+)
AMCG00008232 ddx27 other upstream 564266 47622952 ~ 47671421 (+)
AMCG00008263 NA other downstream 888468 49163816 ~ 49171017 (+)
AMCG00008270 ttpal other downstream 1012898 49288246 ~ 49295359 (+)
AMCG00008271 NA other downstream 1129508 49404856 ~ 49418746 (+)
AMCG00008279 NA other downstream 1564164 49839512 ~ 49858576 (+)
AMCG00008288 ube2v1,LOC103467757,LOC101171992,LOC103139104,LOC103354371,LOC107090722 other downstream 2047365 50322713 ~ 50356404 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022276 arfgef2 coding NC_007134.7 CM002907.2 18986015 ~ 19051869 (-)