AMCG00008316


Basic Information

Item Value
gene id AMCG00008316
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 52266433 ~ 52311801 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008316
CAGGGGCAAGCTCAGCTGCAGTCTAGCCTTGTTCAGCGCTGCACACCGCTCAACAGCTATTCGGGTGTCTTGCAGTTTCCACCTTCAAACGGCAGCGATATTACAGCATTATTCAGTCACATCTAAAACTACGGCTGAAAGATGAAAGCCTGCATAGCACTTGGATTATACATGGTCTTGGTGACCTTTGCTTCAGGCGACACCTGTGATCTGGCCACACATTATATGGAAGGTGTAGAATGCTGCTCAAAGTGCAAGCcagGTGAAAAGATGGTTGAATCCCATTGCACAAAACCTGTGTGTGAACCTTGTGCAGATGATGAATACCAGTCGGAATACAACAGGGACCAAAAGTGTTTAATGCAGCCCTACTGTGACCCAAATTCATTCTTCAAGGAACCAGAGCCCGCCTCCAAGTTACAAATTCGTGAGTGCGTATGTATGGATGGTTACCATTGCTCTGCTGAGGAATGTAGTACTTGCATAGCCCACAAACAGTGCCCAGAGGGAACCCAAATTAAGTCAAAAGGAAATcctaaaacaaatactgtgtgTGAGGCCTGCCCCTCAGGAACGTTTTCCAATGTCACTTCAGCTGAGAAATGCCAGCCATGGACTAAGTGTGAGGGGAGAAATGTGGCTAAAGAAGGAGACGACAAATCAGATGCTGTTTGTGgtGAGACTAACAGACAGCATGTTGGCATTATTGCTGGAGTTCTGGGTTTTGGAGTTCTCATTGCCGCTAGTGCAATTTTGGCACATGTTGTGAAAAAGGggtACCTAAAACAACTCTGCAAACAGCGCTGGTGTTCGTGGGCTGGTGGTGGTATAAGTCACGCAACCAGGAGCCCGATGCCAGGACCGACAAGGAGGATGGAGCTGGAGAGGGTCTGCCCAAGACAGACAGCCTCCCTGTCTCCTCCAGCGAATACACCCCCGGCATTGTGGATCAGAGCTGCTCCCAGGTGGAGGACGGTGCCGGAGTGGGTCTGTCAGATTCACCCAGCCTCCCTGCCCCCTCTAGCAAAGGCAGCGACTTAATTGGGGACCAGAGCTGCTCCCAGGTGTA

Function

GO: NA

KEGG:

id description
K03160 TNFRSF5, CD40; tumor necrosis factor receptor superfamily member 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008316 True 1069 mRNA 0.50 9 52266433 52311801

Neighbor

gene id symbol gene type direction distance location
AMCG00008310 NA coding upstream 609433 51652364 ~ 51657000 (+)
AMCG00008308 pfdn4,pfd4,LOC107697845,LOC107758785 coding upstream 706346 51552606 ~ 51560087 (+)
AMCG00008309 NA coding upstream 723537 51535470 ~ 51542896 (+)
AMCG00008304 NA coding upstream 929748 51333303 ~ 51336685 (+)
AMCG00008296 NA coding upstream 1684250 50562754 ~ 50582183 (+)
AMCG00008320 NA coding downstream 88 52311889 ~ 52315183 (+)
AMCG00008315 NA coding downstream 60497 52372298 ~ 52376305 (+)
AMCG00008326 NA coding downstream 136148 52447949 ~ 52483301 (+)
AMCG00008328 snta1 coding downstream 225479 52537280 ~ 52551487 (+)
AMCG00008327 NA coding downstream 248535 52560336 ~ 52566145 (+)
G30219 NA non-coding upstream 477286 51788910 ~ 51789147 (+)
G30206 NA non-coding upstream 678888 51570722 ~ 51587545 (+)
G30205 NA non-coding upstream 694875 51564113 ~ 51571558 (+)
G30195 NA non-coding upstream 750702 51515475 ~ 51515731 (+)
G30174 NA non-coding upstream 800166 51464524 ~ 51466267 (+)
G30283 NA non-coding downstream 25243 52337044 ~ 52337267 (+)
G30297 NA non-coding downstream 65658 52377459 ~ 52377854 (+)
G30232 NA other upstream 164909 52100762 ~ 52101524 (+)
G30166 NA other upstream 838378 51426581 ~ 51428055 (+)
AMCG00008288 ube2v1,LOC103467757,LOC101171992,LOC103139104,LOC103354371,LOC107090722 other upstream 1910029 50322713 ~ 50356404 (+)
AMCG00008279 NA other upstream 2407857 49839512 ~ 49858576 (+)
AMCG00008271 NA other upstream 2847687 49404856 ~ 49418746 (+)
G30299 NA other downstream 66528 52378329 ~ 52378776 (+)
G30300 NA other downstream 69540 52381341 ~ 52382418 (+)
AMCG00008334 prex1 other downstream 679484 52991285 ~ 53087480 (+)
AMCG00008335 NA other downstream 799202 53111003 ~ 53148134 (+)

Expression


Co-expression Network