AMCG00008317 (pxmp4,LOC103464829)


Basic Information

Item Value
gene id AMCG00008317
gene name pxmp4,LOC103464829
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 52366153 ~ 52370382 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008317
CTGCACCCCTGTCACACAAGTTGTGTTGCATTGATTCCGGTCCTCCGCGTCTCCCTTCAAATCATGGCCGGGTCTGatgttttcaaaactcttcTCTATACAATTAACAACCTGCTGCGACAACAGCAGCACCGAGCGGTTCTGGCGGTTGTGAAGGGCTTCAGGAATGGAGCCGTATATGGAGCAAAAATCCGCGCACCCCATGCCCTTGTGATGACGTTCCTCTTTAAAAACGGAAGCCTGAAAGACAAACTGAGAGCCATTGCCCAAGCGACGTACACCCACTCTCGAAACCTGGCCTGCTTCGTGTTTACCTATAAGGGCCTGCAGGCTGTGCAGGAGCGTCTCCAGGGCAAGAGTCTACAGTCCCACTCCTTCATGGCAGCTTGCCTGGGCGGCTGGCTTGTGTTTGGGGAAAACAACCACATCAACAGCCAGATAAACATGTACCTCTTGTCCCGGATCCTGTTTGCCTTGTCTCGCCTGGCAGTGGAGAAGGGCTTGCTCCCCCAGCCGAAGAGAGACCCTTTCCCCCTGTTTGCAGCCCTGGTCTGGGGGATTGTGCTGTGGCTCTTTGAGTACCATCCCCACACACTCCAGCCTTCTCTCCAGTCCTCCATGAATTACCTGTACCACGACAGCAATGTGTGGCATGATATCTCGGACTTCCTCGTCTACAACAAGCCACGGGCGGGGGCCCAGAAATAGACTTCACTGGGTGTTTTTATCCGTGGACCTCATCCCTGTTTCCCTTCCAGGCATCAGTGGAGATCTAGTAGTAGGAATGCAAAACGCCTGTCTTTTTAAATAGATGTTGTTGCAGTGTCGAGAGATGTGTGGTTCGAGGGTTAGGACATCACCCCTTTGGTCCATTCCAGATGTTCATGACCAGTTAGAGCAAAACTTCATCCTGCCAGCAGCATTCTGTCTTTTTAAGCTTCTGTTGCTCATTCCATTATTGTGTCATTGATGCAGACTTCAATTCAGAGTATGAGTGTAAGTGTGCATACTCTATCCTAcatctttttattaaaattagattCAATTTATTGACCTTAGAAATGACTACTGAGTATACTACTGATCCACAGAGGAAGCTGGGTTTCCCGATATGTGAAATTAGATCTGTTAACTTTTTTAATTGGGCACTAGCATTCATCACATGGCAgtttatcttgtttttatatGGGGGGAGATGGCCCCCAATTTCTGCCTACATGTTTAAACTGTGCATTGAGCGTGaagtcaatattttatttgctcaGTATGTACATGACAGCTATATAAGTTAAGCAAACactacaattaagcaattaacctATAGTAATTCTACTTTATAAattgaacaaaagaaaaaagaagacaattttcagtttctcatgttttcaaaatgatgaATGCATGTAGTGCTATTAATAATGCTATTATGATTTTAATCCTGTAATTCTAAAGGTGTGGATGTTTAGATTGGTATAGACGGTACTGTTCTGTGACTGGTGAAGTCACAgctgcacatttaatttaatctatttttttttttcctgttactgaactacaattttttttttttcttgtttatacTGGGCATTAATATAGAAGCAGACACACAAGCAGAATTTGTGTTAAAATCCCATCCCTATTTTACAGTAGCAATGATACAGGGTGATGTTGTAGAAGCAGTTTATATAgacatcatttatatattttttactattataactaaaataatcagattcgttaaaaacaaagtttaatttcACAGAGCGACGgctgtgctttttctccacacaAAAAGCAGCCTAGTTATGGGCTTCAAAGAAATGGAGCAGCTGTGGTCTTTGCCTTATTTGATCTACATTGGCGCTATAGCACCAGGCAGTATGGCAGCATGCATTCTAGGTCTCGGGGCTAATGGTGCATATTCCACAGCATGTATGAGAGTGAAATGGATTTCCTTCCTCGGTCTCGGCATCGCAGCAGTCTTTTGCAGTTCCAGTATGATGACTTGAACGCTGCTTCTTGAATCCCTTCAAGGGGCCAGAGTTTGCCTGCGAATCCTGCAGACTCCTGtgaatttgtttcatttttataagaCCTGGCCGACCGTGCCTGACTTTGTTGAAACCCATCCAGTGCTGGCATCCTTAAGTTATTGTTGGTTAGTTCTTAGTTCTTCCTTCAGTGTTTCTTTCAGTGCTCTTCTTAAAACTAGAACTGCTGCACTTAATTTGACCCATCAATGGAGATGTTCAGATTGACCCTGATAATCAAAACCGGATGTTgaatgttctgtgtttttgttcatcACTTCCACTAACGTTCATACAAAACCCTGTAGCTGATTTGTGCATCATATTaccagtgatttatttatttttgttatgaaaaataattatgaaaaccTAGTATTCACAATAAATGTTGCTTTTGAATGTAAAATAGAGCTGTTTTTTGGACAGTGTTGCTTAATCATtcaatttataatgtattattgaaaaGGCAATGACAGTTCACTATCAATGTCATTAACcttgcattgtttttcttttaaacttgatttttttaacactgaatGGATATcaagtatatttaattgtactcTGTGTACATAAACTCCTTAACAAAATcagaatcaaataaaatatgtatataatgtaa

Function

symbol description
pxmp4 Predicted to be located in membrane and peroxisome. Predicted to be integral component of membrane. Predicted to be active in peroxisomal membrane. Orthologous to human PXMP4 (peroxisomal membrane protein 4).

NR:

description
PREDICTED: peroxisomal membrane protein 4-like

GO: NA

KEGG:

id description
K13350 PXMP4, PMP24; peroxisomal membrane protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008317 True 2658 mRNA 0.41 4 52366153 52370382

Neighbor

gene id symbol gene type direction distance location
AMCG00008319 NA coding downstream 4110 52356501 ~ 52362043 (-)
AMCG00008321 NA coding downstream 20626 52345029 ~ 52345527 (-)
AMCG00008322 NA coding downstream 72739 52252677 ~ 52293414 (-)
AMCG00008314 NA coding downstream 116057 52189182 ~ 52250096 (-)
AMCG00008313 cbln4,LOC106567122 coding downstream 221426 52137169 ~ 52144727 (-)
AMCG00008323 NA coding upstream 15978 52386360 ~ 52388370 (-)
AMCG00008324 LOC106566898 coding upstream 18413 52388795 ~ 52425671 (-)
AMCG00008329 cbfa2t2 coding upstream 122959 52493341 ~ 52505322 (-)
AMCG00008331 NA coding upstream 201738 52572120 ~ 52584025 (-)
AMCG00008332 NA coding upstream 256133 52626515 ~ 52649562 (-)
G30276 NA non-coding downstream 39762 52326161 ~ 52326391 (-)
G30275 NA non-coding downstream 40116 52325705 ~ 52326037 (-)
G30270 NA non-coding downstream 77030 52288890 ~ 52289123 (-)
G30266 NA non-coding downstream 87034 52278857 ~ 52279119 (-)
G30237 NA non-coding downstream 209074 52156790 ~ 52157079 (-)
G30409 NA non-coding upstream 709202 53079584 ~ 53082902 (-)
G30417 NA non-coding upstream 774803 53145185 ~ 53148173 (-)
G30479 NA non-coding upstream 1041612 53411994 ~ 53416431 (-)
G30486 NA non-coding upstream 1060570 53430952 ~ 53434101 (-)
G30505 NA non-coding upstream 1116459 53486841 ~ 53491107 (-)
AMCG00008318 NA other downstream 27056 52329236 ~ 52339097 (-)
AMCG00008298 NA other downstream 1838117 50523987 ~ 50528036 (-)
G30054 NA other downstream 2091970 50273738 ~ 50274183 (-)
G29974 LOC101154678 other downstream 2312051 50053825 ~ 50054102 (-)
G29928 NA other downstream 2461064 49795971 ~ 49905089 (-)
AMCG00008325 znf341,LOC106566899 other upstream 10674 52381056 ~ 52384567 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location