AMCG00008326


Basic Information

Item Value
gene id AMCG00008326
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 52447949 ~ 52483301 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008326
atTTTTCGCCGTGCCGACAAGAATGATGATGGGAAACTGTCCTTTGAAGAGTTTAAGACCTATTTTGCCGACGGGATTCTCAGCACAGAGGGGCTGCATGAGCTTTTCTACTCGATAGACCGGCATCACACCAAcaaCTTAGACACAGAGAAACTGTGCGactACTTCTCTCAGCACCTTGGAGAGTACGTCAATGTGCTCTCTGCCCTGGAGAAGCTGAATATAGCCATACTGAAGGCTatggacaaaacaaaagagGAGTACCAGAGCTCCTCGACGCTGGGGCAGTTCGTGACCCGGTTTCTCTTGCGCGAGACCTCCAGTCAGCTGCACTCTCTGCAGATGTCGCTGGAGTGCGCTATGGAGGCAGTGGAGGATCAGAGCTGTCAGGGAAGGAAAGACGGAAAGAAAGCAGAAAGCCTTTCGGTACAGAGGCCGAGCCGGAGATGTGGACGCCGGATTCAAAAGAACTTGTGCTTGTCCCCTACTGACCCCTACTCTGGCATGCTCACCTCAGGAGTAAGTGTGGAGCCAGACAACCACTGGGCCTCTCAGATCAACAGACTCCAACAGCTCATTGACAAGCTGGAGTGTAAGAGTCCAAAGCTGGAGCCAGTCAAAGACGATACCTTTGCCACCCCTGACAAATCTAGCATCCTCCTGGTGCAGAGGCAGATGTCAGTGATGGAGAAGGACATGGAGGAGTTCAGACGCTCCCTGAGGCGATACACCGATGCCACGGCCGGCCAGAGCGCCAATCTGCACATTTCGGTGCAGAAGCTGCCAGAAAAACTGTGCTTCATAATGTTTGAGTTCTGGCAAGACCGAATCTCCTGGATGAGCTATTCCCAGTCAAACCCCAGCAAGACTTTCCAGAGAGGTATCATTGACACACTGGAGAGTCCAGAGCTGGTCAACACAATGCTGCTCCCAGCATCTTGGTGGATTATGAACAACAATTGACAGCGCCAGGCTCCGTCTCTACACCCACACACATCAGGGGGAAAGAAATCTCTAGCCTGCGATGCTTTCTTCAAGGCTATAAGAAGACATAATTTAATACATGCGTGACAGCATCCCACACTACTTTAAAGTCAGTGCGCCGGTGTTGTGTATGAACACGACAACAGAAATGCTAATAGTccatacactcacacaaacatgaagatacatttcaaatacagacatttgtgtttattggtattattttgaatttgcagTTGCAGTTAAGTTCGATACGTTTCTGGTTTCTAAGTGAATCCAGAGAAAGGAGAGACCGTGTTTAAAACTCTGCCTCGATGGTCCTGACAAGCCCCACAAACTTGCCGGTCCTTCGAATGGTCCAGTGTAGTCTGATACTATCCATGTCAGTGTGGCTGAAGAAAgtaatataaattgaatttgatTTCACACATTGGATTTGAAGTACCTATcgtacatataaacacacatatatacacacacggtaaaatattattttaaagttgtataagtaaaaacaataacaacaatgttAGGACACTGAACATTTGAAGATCCTCAACTGCCTAGGATGCCAATTCCAGTCCATCCAATTGTGTGTATTGTTCAAAAATAAGGATTTATACAACTTGAATAACTTATATTTCATAACATACATGCTATTGTAAAGGGTTGATAAGATCCCAAATAGATGTTAACTTTATTATAACTGCAGTCAAATGTATTACACAGTTCTGTGGTATAAGTAATACCCTCCATGGttttaacacattacattttaacacattatgtTATCTGAGCTCAAAGAAATGTTGACTTTCTTAGAATAGGCTTAAATCGCCATTTCGTGTGGTTTCCCAGCTACCAATTTTCTGAAGTGTTTTAAGTGTCCCACATATGTCCTGTAACTGTGCAGGCTTTCTCTGCGAATCTccagcaaacaaataaacatttctttatCCTTTGTGGAATCATAatagttgcagcttcattttcacATAGCGCATCACATTTTCAGTTGcaagagagaaaatgtacagtttcaaattatgttaaaatgtcaaGCATTGCACACTATACTacagtgtaatatatatgtatatatagcatGCAGTCTACAGAATTCTGGTTCCAGATTATAgatttagaaattaatgaatagTAAATGTTACTGCTgttagattaatttaaaacaagccCTGTCTGAGTTACAGTACCCCTGCCTCAGGCCTGTATAAAATAGGATATTTTACGTACAGTAGTGTGGGACTGCAGCTGTGGAGAATAAAATCATACACCTTAACCTTCATTTTCTGTTCAGGAAGGTTTCCCGTCCCCCCTATCAATTGACCTTAACAGGAAAccagattaaaatatacaaaatgtaaataataatagttgatTTAGATGTGCCAGTCATGAACAATGTATTGGCAAGACTTTTCTCAGGAAGGCTTTGGACAGCTTCCAAGGCCTCCTAATCTAGGCTACATGGGCCCACGGTAGACGCTGAGGACTGATGATATTGGGGTAAAGTGttacaaaacataagtgcatCTTACTATTGATCACTTAAAGTAATTGATTAAAAAGCTTCTCGAAGGGTACGTGGAGTGACTCACAGCAGTGTATTTCCCCGGGCTCTCAGCACTGCCAGCTCCACTTTGAATATAAATTGGAGTGAAATTGATATCCATCTGGTAGAGTATGTGGAACCCATCTAGGAGATCATTTTCCTCACGTATTAAGGGCAGCTGAGAACCAACAGGTACAATTCCAGCATACCCTCCTTAGACTCCAGACTGGATGCCTTGGGCAGATTGGTTTTGTGGCTGCTTATTGCTTTTAACAATATTATAGGAAGGGTATTTTTATCCTAAAGTCCTGGTACAAGGGGCAGTATgaatttcaagaaaacaaaatcatgaaaaaaaaaaaaagagtaatcaaaattgaaaataaaataataaaataaaatattgagcAACAGAGGAGCTATAACGGTTGGCCCACTCCATTCAATCGCACTACAGCCCAGCATAGCTGcttttctgtgctttgttttttggacaaaaatctaaaaaatgtgTGGTTTTGGTAGCTAGCCAGTAAAATATATCACTTTCAGAAACAGTTGCCCAAGTATTCCTTGCCATGCAGAAACTGTTTCCATAGCATTTTATGACCTCGGCCGCGTTCTTCTTCGGAATGGACGGCTGCAAAAGATCTTTCTCCGGAGATGAATGTGACAAGATATCCTTACAATTTTCTATAACAGTGATATTAATAGATAAGGAGATGACAGCTGTTATTGCGTGAGGCATCGCATCTTCGCTGGAAGTACAGCAATAGCGAATAAAGAGCAACAGCCTTGTGATTAAAAGATGGCACTTTTAGCTTGACATAGAAATGACACCCAGGAACACAGAGATAGAAAACAGGTTCATGACACTGCCATTTCTACAGTAATTATTTCAACCCTGGGatagaaaacaacaaagccAGTCATAGTAcaaagctatttattttgttattattctgttcttatttacaattaatctgaatcaaactgaaaatgtgtttctcatttttctGGGTGGGATCTTACTACCTTTCTTACACATCCAACAGTGATTTTCCTGTCATTAACAATCTCCTCAATGAGATGGAGCAATGCTGGTGTCCAATGCAGTCCGGTTGTGAAGTGCAGTATTGAATGCAGTCAACGAATGGCAGTGTTTCCccagtgatttttattttttaataaacaggtGCCTGCTTATATAAGCTTTGATTTCATTACGTTGTTGCCTCCAATAAAAAAAGGATTGTGTCAAGAAAATATGTCATATTGGAGAATAATCACGTTCAATATGGAAACCTACTTTGAAATTGTGATTCTTAACCAGAATAAATGTAAACCTTTTAGTAA

Function

GO: NA

KEGG:

id description
K23854 NECAB; N-terminal EF-hand calcium-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008326 True 3913 mRNA 0.41 12 52447949 52483301

Neighbor

gene id symbol gene type direction distance location
AMCG00008315 NA coding upstream 71644 52372298 ~ 52376305 (+)
AMCG00008320 NA coding upstream 132766 52311889 ~ 52315183 (+)
AMCG00008316 NA coding upstream 136148 52266433 ~ 52311801 (+)
AMCG00008310 NA coding upstream 790949 51652364 ~ 51657000 (+)
AMCG00008308 pfdn4,pfd4,LOC107697845,LOC107758785 coding upstream 887862 51552606 ~ 51560087 (+)
AMCG00008328 snta1 coding downstream 53979 52537280 ~ 52551487 (+)
AMCG00008327 NA coding downstream 77035 52560336 ~ 52566145 (+)
AMCG00008330 LOC106572151,LOC106524167 coding downstream 107230 52590531 ~ 52608548 (+)
AMCG00008336 LOC106565273 coding downstream 435119 52918420 ~ 52953125 (+)
AMCG00008337 kcnq2 coding downstream 604364 53087665 ~ 53087964 (+)
G30297 NA non-coding upstream 70095 52377459 ~ 52377854 (+)
G30283 NA non-coding upstream 110682 52337044 ~ 52337267 (+)
G30269 NA non-coding upstream 158826 52288890 ~ 52289123 (+)
G30219 NA non-coding upstream 658802 51788910 ~ 51789147 (+)
G30206 NA non-coding upstream 860404 51570722 ~ 51587545 (+)
G30300 NA other upstream 65531 52381341 ~ 52382418 (+)
G30299 NA other upstream 69173 52378329 ~ 52378776 (+)
G30232 NA other upstream 346425 52100762 ~ 52101524 (+)
G30166 NA other upstream 1019894 51426581 ~ 51428055 (+)
AMCG00008288 ube2v1,LOC103467757,LOC101171992,LOC103139104,LOC103354371,LOC107090722 other upstream 2091545 50322713 ~ 50356404 (+)
AMCG00008334 prex1 other downstream 507984 52991285 ~ 53087480 (+)
AMCG00008335 NA other downstream 627702 53111003 ~ 53148134 (+)

Expression


Co-expression Network