AMCG00008327


Basic Information

Item Value
gene id AMCG00008327
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 52560336 ~ 52566145 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008327
TGAAGTATATCAAGGAGATGTCTGCCTACTTCAAGAATGCCTCTCCTGGAGCTTCCATCCCCTGGGATTCCCCACCCTCTTCGCCCCAGAAACAGGGGATCTCCAATTCCCCCTCCCACTCTGCGGCAGAGCTAAAGGAAGGCAAGACAATCCCTCTGAAAGTGTGTCAAATATCGAGGAAGCAGTGCCCGCCTGACACAGAAAACAGGTACTTAGAAGTCATTTCGCACGATAGAAGGTCTTCCTTGTTTTTGCGGGCAAAGGATCCTGCCATGGCCCAGTCTTGGTACAATGCCATCCAATCCAATGCCAACGCCCTCATCCCCAGAGTGAAGGAGGACTTAAAGAGGATGCAGGGGGGATCTGGCTGCAAAGACGTAAAGCACATCGGCTGGCTAACAGAACAGTCTTCTCAGGGCTCAGAGAAGCCAGTCCTCGTCATTGTGACTGAGAAGGATCTCATCTTCTTCCATACCTTACCGGAGAGCAGGGAGGCCTTCAACAGTCCTCACCACAGCCACCCTCTCATTACCACCAGGTTGGTCCACTCAGGACCAGGCAAGAGCTCCCCCATCATGGACTCGGAGCTGACCTTCGCCCTGCGCAGTGGAACCCGGCAGGGCGTGGAGACGCATGTGTTTCGTGTTGACTCGGCCAAAGAGCTCTCCGCCTGGACACGGCTGCTGGTGGACGGCTGTCACAGTGCTGCAGAGCTCATCCAAGAGGTCACCACGGCGTGTAACTGGAATGGGAAGGAGTGCACTCTGGCTGTTCACATAGACAAGGGCTTCACCCTGTTCTCAGAGGAGCCAGGCCTCAGCAAAACCGTCCTGCTGCAGCAGCCCTTCGAGAAACTGCGCATGTCCTCGGATGATGGTCAGCTGGACCTTCATTCATGTCCCAAAACCATCGTGTTCATCATCCACTCCTTTCTGTCAGCCAAGGTGAAGAGGCTGGGCCTGCTGGCA

Function

GO: NA

KEGG:

id description
K24063 SNTA; alpha-syntrophin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008327 True 968 mRNA 0.55 6 52560336 52566145

Neighbor

gene id symbol gene type direction distance location
AMCG00008328 snta1 coding upstream 8849 52537280 ~ 52551487 (+)
AMCG00008326 NA coding upstream 77035 52447949 ~ 52483301 (+)
AMCG00008315 NA coding upstream 184031 52372298 ~ 52376305 (+)
AMCG00008320 NA coding upstream 245153 52311889 ~ 52315183 (+)
AMCG00008316 NA coding upstream 248535 52266433 ~ 52311801 (+)
AMCG00008330 LOC106572151,LOC106524167 coding downstream 24386 52590531 ~ 52608548 (+)
AMCG00008336 LOC106565273 coding downstream 352275 52918420 ~ 52953125 (+)
AMCG00008337 kcnq2 coding downstream 521520 53087665 ~ 53087964 (+)
AMCG00008333 LOC107734000 coding downstream 680174 53246319 ~ 53258582 (+)
AMCG00008338 arfrp1 coding downstream 716320 53282465 ~ 53295665 (+)
G30297 NA non-coding upstream 182482 52377459 ~ 52377854 (+)
G30283 NA non-coding upstream 223069 52337044 ~ 52337267 (+)
G30269 NA non-coding upstream 271213 52288890 ~ 52289123 (+)
G30219 NA non-coding upstream 771189 51788910 ~ 51789147 (+)
G30206 NA non-coding upstream 972791 51570722 ~ 51587545 (+)
G30300 NA other upstream 177918 52381341 ~ 52382418 (+)
G30299 NA other upstream 181560 52378329 ~ 52378776 (+)
G30232 NA other upstream 458812 52100762 ~ 52101524 (+)
G30166 NA other upstream 1132281 51426581 ~ 51428055 (+)
AMCG00008288 ube2v1,LOC103467757,LOC101171992,LOC103139104,LOC103354371,LOC107090722 other upstream 2203932 50322713 ~ 50356404 (+)
AMCG00008334 prex1 other downstream 425140 52991285 ~ 53087480 (+)
AMCG00008335 NA other downstream 544858 53111003 ~ 53148134 (+)

Expression


Co-expression Network