AMCG00008328 (snta1)


Basic Information

Item Value
gene id AMCG00008328
gene name snta1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 52537280 ~ 52551487 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008328
ATGGCTGCCGGGATGAAGGCGCAGAAAACCGGACTGCTGGAGCTCCGCACCTCCGCGGATCGCTGGATCCGTGTGCTGGCCTGTCTCAGCGAGGACACGCTGAGCGTGAGGCCCGGGGAGAGCGCCTCCGAGCCCCCGCACCCCAGCGAGAGCCCCGACTCTCACGGAGCGCTGAACGGGGACCCCGGCTGCCTGGGCTCCGGCTCTGCGGTGCCCGACTCGATCACCAACGTGAAGCGCACGGTGCGGGTCACCAAGCAAGAGGTCGGAGGGCTGGGGATCAGTATTAAAGGAGGCAAGGAGAACAAGATGCCCATCCTGATCTCGAAGATTTTCAAAGGGCTAGCTGCTGACCAGACAGAGGCCCTGTATGTGGGGGACGCCATCCTCTCTGTGAACGGACATGACCTGCGGGAGGCCACGCACGATGAAGCCGTCCAGGCGCTCAAGAAGACCGGCAAGGAGGTTGTCCTGGAAGCgttgcccccccctcccccctgcccTCCACCCATCCAGACCCCATTGAGCCAAACGTCCGTCACTGAAGCAACAGGTGACGGCAAGAAACTATTTCACACCACAGCCACCCCAATGGCTTTGAGGCTGACAGGGACAAGGAAGAGCGAGTCAGCGAGAGGAGAGGGCGCAGGACGGCAGGATGGCCCTGAGAACAGCGCCCTGCAAACCAGCGCTGCTTTCCCAGGACTCTGGAACCGGAGCTCCCCAGAGCCA

Function

symbol description
snta1 Human ortholog(s) of this gene implicated in long QT syndrome; long QT syndrome 12; and sudden infant death syndrome. Orthologous to human SNTA1 (syntrophin alpha 1).

NR:

description
PREDICTED: alpha-1-syntrophin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008328 True 732 mRNA 0.64 3 52537280 52551487

Neighbor

gene id symbol gene type direction distance location
AMCG00008326 NA coding upstream 53979 52447949 ~ 52483301 (+)
AMCG00008315 NA coding upstream 160975 52372298 ~ 52376305 (+)
AMCG00008320 NA coding upstream 222097 52311889 ~ 52315183 (+)
AMCG00008316 NA coding upstream 225479 52266433 ~ 52311801 (+)
AMCG00008310 NA coding upstream 880280 51652364 ~ 51657000 (+)
AMCG00008327 NA coding downstream 8849 52560336 ~ 52566145 (+)
AMCG00008330 LOC106572151,LOC106524167 coding downstream 39044 52590531 ~ 52608548 (+)
AMCG00008336 LOC106565273 coding downstream 366933 52918420 ~ 52953125 (+)
AMCG00008337 kcnq2 coding downstream 536178 53087665 ~ 53087964 (+)
AMCG00008333 LOC107734000 coding downstream 694832 53246319 ~ 53258582 (+)
G30297 NA non-coding upstream 159426 52377459 ~ 52377854 (+)
G30283 NA non-coding upstream 200013 52337044 ~ 52337267 (+)
G30269 NA non-coding upstream 248157 52288890 ~ 52289123 (+)
G30219 NA non-coding upstream 748133 51788910 ~ 51789147 (+)
G30206 NA non-coding upstream 949735 51570722 ~ 51587545 (+)
G30300 NA other upstream 154862 52381341 ~ 52382418 (+)
G30299 NA other upstream 158504 52378329 ~ 52378776 (+)
G30232 NA other upstream 435756 52100762 ~ 52101524 (+)
G30166 NA other upstream 1109225 51426581 ~ 51428055 (+)
AMCG00008288 ube2v1,LOC103467757,LOC101171992,LOC103139104,LOC103354371,LOC107090722 other upstream 2180876 50322713 ~ 50356404 (+)
AMCG00008334 prex1 other downstream 439798 52991285 ~ 53087480 (+)
AMCG00008335 NA other downstream 559516 53111003 ~ 53148134 (+)

Expression


Co-expression Network