G22192


Basic Information

Item Value
gene id G22192
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 8253893 ~ 8254655 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU27821
atgagccttggctgcccatgaccctgtcgccggttcaccgcttttccttccttccttttcctttttcctgcttcttacacatcaactttgaggacaaaatgttcacttgctgcctaatatatcccacccactgacaggtgccatgataacgagattatcagtgttattcacttcacctgtcagtggtcataatgttatggctgatcggtgtatggaTTTATGGATATATATTAACATAGCCTACCTGTATCTGTATATGCGTTCAATGGCTCTACAATAACTTAATGCACTAATGAGTCATTTACATATCGTTCTTTGCAATCAAGTCATTTGCCACATCGttcttttaaaatttaaatattttattctgtttgtgtagttattacttttattttgtatttgtgtagttctaCTGTTTGACTGAACAATTAAACATAATTGGAAAGTAAATTTGAAGAGTCTTCCCACTTCTAAAAGAGTTTAGGAAAAATGCCCACTGCCACACCCCCCAAAACTCCCACCAACGGTAAAACTGACCACCGCGGTACATTATTCTAAGGTATAACGATATTAAGAATCTGTCACCAGCACAGCCCTACTTTTGATATTTTATGacactgtattttctgtatctttGGCTGCATTTTGTTACCCCATGCTGTCAGTCTTTTAGATTACGCAATAaaatgatgattaaaaaaataaatatgaagcaaactaaaaatgaatctccttcacttttttttttttttttttttttttt

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis
ko04927 Cortisol synthesis and secretion

RNA

RNA id representative length rna type GC content exon number start site end site
TU27821 True 763 lncRNA 0.35 1 8253893 8254655

Neighbor

gene id symbol gene type direction distance location
AMCG00007241 NA coding upstream 2074 8242184 ~ 8251819 (+)
AMCG00007245 rergl,LOC104925113 coding upstream 32257 8217578 ~ 8221636 (+)
AMCG00007244 NA coding upstream 48772 8187419 ~ 8205121 (+)
AMCG00007231 NA coding upstream 152105 8098065 ~ 8101788 (+)
AMCG00007230 tmem9b,LOC107700603,LOC107754675,LOC107585953,LOC107750540,LOC107674442 coding upstream 157711 8092029 ~ 8096182 (+)
AMCG00007252 NA coding downstream 417834 8672489 ~ 8687381 (+)
AMCG00007250 insc,LOC106561064 coding downstream 496512 8751167 ~ 8762076 (+)
AMCG00007251 insc coding downstream 523314 8777969 ~ 8784734 (+)
AMCG00007254 NA coding downstream 626229 8880884 ~ 8957404 (+)
AMCG00007257 NA coding downstream 924248 9178903 ~ 9185848 (+)
G22076 NA non-coding upstream 352718 7900779 ~ 7901175 (+)
G22038 NA non-coding upstream 548534 7705148 ~ 7705359 (+)
G22027 NA non-coding upstream 578016 7669719 ~ 7675877 (+)
G21985 NA non-coding upstream 646822 7606579 ~ 7607071 (+)
G21949 NA non-coding upstream 722123 7531563 ~ 7531770 (+)
G22204 NA non-coding downstream 190270 8444925 ~ 8445550 (+)
G22208 NA non-coding downstream 195429 8450084 ~ 8450494 (+)
G22209 NA non-coding downstream 196112 8450767 ~ 8450978 (+)
G22211 NA non-coding downstream 229607 8484262 ~ 8484504 (+)
G22212 NA non-coding downstream 237506 8492161 ~ 8492457 (+)
AMCG00007232 rpl27a,LOC107687759,LOC107726310 other upstream 70472 8147398 ~ 8183421 (+)
G21891 NA other upstream 874947 7374323 ~ 7378946 (+)
AMCG00007196 svip other upstream 1035418 7211564 ~ 7218475 (+)
AMCG00007160 NA other upstream 2478437 5757677 ~ 5775456 (+)
AMCG00007154 ptpmt1,LOC102795413 other upstream 2581748 5668196 ~ 5672145 (+)
AMCG00007243 rbtn1,lmo1,LOC108713718,LOC107593328,LOC106609843,LOC107725665,LOC107085592 other downstream 112781 8367436 ~ 8396242 (+)
AMCG00007242 NA other downstream 176447 8431102 ~ 8451582 (+)
AMCG00007253 calcb,LOC106584617,LOC104951332,LOC107090894,LOC106922915,LOC106950942,LOC103461098 other downstream 443328 8697983 ~ 8711311 (+)
G22372 NA other downstream 1181869 9436524 ~ 9499728 (+)
AMCG00007278 NA other downstream 1682265 9936920 ~ 9965267 (+)

Expression


Co-expression Network