G29612


Basic Information

Item Value
gene id G29612
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 48415003 ~ 48419063 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU37075
CTGGGAGataaagttgtttattttacatgcgTTGCAAAAGGTTTAACAGGACAActgttacaaaaaaaactgaaaaggtcATTTTAACTAAActcatacaaaaacagcattacATTAAATGGCTGAATTCAATACATCAAGATCTCATTGAAGGTTGAATAGAACCTGAACTTTTACATCTGCTGGGAAGAGCAGATCTCCAGCCTTGACAGCAATATGCCACCCAGAAGCCACTTCAACCAGAGGCACCAATCCACACATCCCTGCAATCTATATGGTACCCAGAGGCAAAGCTCCAACTGCAGCCACCATGGTTCTAGCAGGTCTGCAGAAAGGAAACATGGAAACATCCCCTTTATACATTGGAAACCTCCATTCATAATACACAGGATGTTTTTGCCTTGGTGCATCAGACAATTTTGGCTTAAAGTAGCATGCAGTCAACACTATCGATCTGCAGGGGAAAAAAGATCAGTCATCATCAACACCAACATCAATTAATTCTGCAACAAACTAGACAACACATTGACATATAGGCATACCACACTTTGCATGAGATCTAATTGATGGGGACAGGCTTAGGAAAAGATGAAAACTAATATGAAAGTGTTGTACTACTATAAATGTGGTCATCCCAAAATAGGTTTGATAAATCCACTCACCATATTTATTAGAATTCATTTTAATCCGTCAACATTCTTGGCTCCCGATTGATGCGCTTTCGGTTCGTTTAAAATTCACAGGTGAAGGTTCCACTTACGGCATGTTTGGCCCCCCATTTGGATTCCCCCCCTTGTTAATGCTAAACTGATCTACTGTAATTAAATCTTTATTCAAGGGGAGCGCGAGTTGGTGGGACTGCAGGGAGCATGTGCCGGGTTTCATTCTACTCACTTTGTGGAATTTAAGTTGTGTAAATTGCATGGCTGTttcaaactaaaaaactaaatctatgCTAGAGGAGTTCAGTGGTTCAGATTTGcgaacatttgacattttaaggaGTTGTAAATTGGTGCTATAATTGAATTTGTGCATAGTGTGGGTATGCCTTTACTGTACTTACATCTATATGGTACCCAAAGATTCTCCAAATGCAGCCACCATGGTGATACCTAGTCTGCAAAGAGAAAACACCCTCTTTACACAATGCATCAGACATTCaataacattgttattttttcaccttGGTGTGTCAGACAATTTTGGCTTAAAGTAGCATGCAGTCAACACTATCGATCTGCAGGGGAAAAAAGATCAGTCATCATTAACACCAGTAAACTACACATCACATGAAAGTTCATACTGTACTTACATCTATACGGCACCAAGAGACATTGTTCCAACTTTAGCCAGGACGCTTATCCCCAGTCTTGTTTCTCCATACCTTAATGGCATAGGCATCCCAAGGGAAAACCACAGATGAATTCTTAATCACTGCAATAAAGTAGAACACAATTAGATTAAAATCGCCATTCTTCAGAATACACTACTTTCATTCTTGCTGGTGCATCAGAGCATTTGGCTTTAAGTTCAGAAATGTCAACATTATCGAtctgatggggaaaaaagatgTAGTCATCATATTTACACCAGCACTCACATAAGAACTTAAGTTcgcaaacaacaaaaaactcacAAGTCACAATCCCAGGTACGGATCTTTCAGTCTGATCTCCCATTGCAATTTCTGCACATTCAATACCATTTTCATTAACAAGAatcctgcaaaataaatcaagaattGGTAGCTATTACTTGTATAACGAACACATTTACCTTAGAGGAACCATTTTAAATTCAGGTAATCTTCCTTATAGTCACGacaatatacatgttttgttgtgcATACAAATGAAGActgcaaaatgcatttattacaagcaaaacatttgattcTCAGCCACATCTGAACAATGATCTTTCTAGGCAAGGCTATGCTTATAGAAACTTGATATGATTTCATTACAGATGTAAAGActgattaatataaaacatccataaatatatatatatatcttattacatttaatagttATTAATgcttacattcaattaaattacatcaatACTTCATAAATCAGTTCTCAGAATGTCCTTACAACCGCTAGTACTCGTTATTTTCGTGCGATCAGTTGTTATTCTAAAGATTTAACATTGGACCCTTGGGATGATTGATATTTGATTAACACTGCCATAGGTACAGAAGTTGGAGATTTAAATCGATACACTCTATAGAAAGCAATTCCTCTTCATGTAGTTTCATTGGCCGACTACGCGATTGTAATCCAGTTTTAAACAGACAGATTGAAAAGTGCACATTTGAAATGAGATGGAAAAAGATCACTGCAGTAAGTATAGAGCTTTATTGAAACAACGTGCTGCGATACAAGTTAAAAGTAAACGAAATTAGATTTAAACTGTTTAGCAATGGCGATCAGTAGTACAGCAGCCTACACGTGTGCGAGCGAAGGAGTACGTGACTTAAGGGCTTCCTTGAaaacgtgttttttttcctaaactGTAGAAAACTGATCTATTGCttgatacattatatttaatatagcaGGCATGTTTATGTAGCAGAATTTTATAACTCGTCCATTTAATCGCATTATATACATCGAAAGAGATTAATATACGGTATTGTATATTGATCCGTAGCTTTAACACAATCAGAAAAGTAACTTCGTGTGCACACatgatttttataaatattgttatgCAAGATCACACTGGATGACTACCCCCATCTTACCTGCTCACAGTGCAGCAGTGAAAGAAAGTCCACACGTTGTAGGAAGCCTTTATGAGGACGTTTCCTGGGTTACTACGCATGTGCAGCGGAAGTATTTCTCAAGTTGCATGACGGGAAGTATAATGGTACATTTTTGGAGGGGAGACAGTAGTAGAGCAACTAGTCAACACTAGGtgattttactatatttttagtacatttacatttgca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37075 True 2968 lncRNA 0.37 4 48415003 48419063

Neighbor

gene id symbol gene type direction distance location
AMCG00008253 stau1 coding upstream 38932 48347747 ~ 48376071 (+)
AMCG00008252 cse1l coding upstream 88865 48292639 ~ 48326138 (+)
AMCG00008251 arfgef2,LOC106532188 coding upstream 139655 48235687 ~ 48275348 (+)
AMCG00008246 NA coding upstream 347460 48042746 ~ 48067543 (+)
AMCG00008247 LOC107565828 coding upstream 384274 48015100 ~ 48030729 (+)
AMCG00008250 NA coding downstream 43230 48462293 ~ 48474532 (+)
AMCG00008262 stk35,LOC105016730,LOC106583621,LOC103372836,LOC104935842 coding downstream 504801 48923864 ~ 48940095 (+)
AMCG00008272 NA coding downstream 1050226 49469289 ~ 49471615 (+)
AMCG00008280 jph2,LOC107707015,LOC108275945 coding downstream 1130843 49549906 ~ 49560080 (+)
AMCG00008281 NA coding downstream 1168004 49587067 ~ 49596793 (+)
G29546 NA non-coding upstream 278279 48136469 ~ 48136724 (+)
G29431 NA non-coding upstream 799072 47613501 ~ 47615931 (+)
G29425 NA non-coding upstream 808578 47605140 ~ 47606425 (+)
G29424 NA non-coding upstream 812317 47602218 ~ 47602686 (+)
G29423 NA non-coding upstream 813902 47600820 ~ 47601101 (+)
G29615 NA non-coding downstream 9912 48428975 ~ 48429218 (+)
G29661 NA non-coding downstream 255185 48674248 ~ 48676139 (+)
G29675 NA non-coding downstream 342909 48761972 ~ 48762297 (+)
G29677 NA non-coding downstream 343622 48762685 ~ 48803905 (+)
G29692 NA non-coding downstream 401412 48820475 ~ 48820694 (+)
AMCG00008249 NA other upstream 473249 47929667 ~ 47941754 (+)
AMCG00008241 LOC106596195,LOC106601018,LOC105896344,LOC105896343 other upstream 496875 47913868 ~ 47918128 (+)
AMCG00008242 hsp70.2,LOC108441608,LOC105896344,LOC105896343 other upstream 522932 47863569 ~ 47892071 (+)
AMCG00008238 hsp70l,hsp70.3,LOC105896343,LOC105896344 other upstream 698421 47664517 ~ 47716582 (+)
AMCG00008232 ddx27 other upstream 743582 47622952 ~ 47671421 (+)
AMCG00008263 NA other downstream 744753 49163816 ~ 49171017 (+)
AMCG00008270 ttpal other downstream 869183 49288246 ~ 49295359 (+)
AMCG00008271 NA other downstream 985793 49404856 ~ 49418746 (+)
AMCG00008279 NA other downstream 1420449 49839512 ~ 49858576 (+)
AMCG00008288 ube2v1,LOC103467757,LOC101171992,LOC103139104,LOC103354371,LOC107090722 other downstream 1903650 50322713 ~ 50356404 (+)

Expression


Co-expression Network