G30132


Basic Information

Item Value
gene id G30132
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 51006377 ~ 51010069 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU37686
GTTCAGTGGTTCATATGAATGTGTAACGAACTTTATTTGCTTTCCTTAAAAGGATGTTTACATTATACAtccagatttatatataaaacaagaactgcattacattattatgattttttttacagtaccCCCCTTTAGCTCATACAACCTGGAATGGttcttttcttcattaaaaagaaaaaagaaaaaagagggCATTTTTATTTAGCATGAAAACAGCTTTGAGTAGCTCACATTTGAaaggtttaagttaaatctTTTGACAGATAGCTGATGTATGCATATGCTATTCACCATTGTAGATCCTTGCAGAAGGTCAATGAAttgttcatacattttttcCTACCCGattacacacacaacataaaatTCTGTCTCATTCCAGCTTGCTTTATGGTGTCTATGACAGCTGAAGTCTGTGTAGACTGTGTAGCCATTTTGTCTGGCCTCTGGAACATCATtaatctacttttttttttttttgctgagatTTATAGTCGATATTATAGAGTTGGTAAAAGCTGACAGGCTGCGGGTGAGCTTGGAAAGCTATTACCTCTGTAAGGAAAATCAATGGTCAATGGTTCCTAAGAGAGCACTTCCCAAGTGGAGTCATCACCTTACAACAATTAATGACGGATGGACACAGTGAGGATACATGCCCACAGACGCACGAACAATGCAAAGGtagaaaagaacaacaaaagtcaaacaaaatgtcaatttgaaaaacaactgTTTATGGAGATAGGGAAAAGGTACATTTGGAAAGCAAATCAAACCAAACTAGGGAATTGATTTATGATGGTGATTTGACATGCAATTTGGCGACTGtctattttattacatattttcacaaaacactCCTCGTGTGGTGACACCCAACTGGATCATTCTGAAGAAGACAGAATAAAAGAAATACCCTTTTTGTGTTGTGAAGACCAAGCCTTATAAAAAAGTCATCTGACACAGATACCaaacataaatatgtacatatttctaAGATAATACAAAACCAAGGTTGACATTAAGTGCCCAGTTGCTTATCTCTGCATGCCACCTATTAACAGGAAGTTTTCAAATACTCACATCTGAAAAATGCCACAACCATTATCTGTGAGTAATTTTTCTACAATTTTATATGATAGAAAAAGCATATCTTTGTttacaacatgttttaaagaCAGCTCAGCACTGATCATAGTAAGCTGATAGCACACTCGtataagaacaaaaacattcaaggtaaaagaaaaaattaGGTAGGCcacaaaatcacttttttttttttggctttctGTCACTATCTTATCATCTTTCTTGAGTTGTTACCGTTAAACTGTGTCCAAtgtgtaacattaaaaatacataaaagtggTAAAATAAGTGTGTGCTTATGTAGTTAATATAGAGATGATGAAACAGTTGATGAGAACAGATTTCCAAATGCTGATTGTCATTAATAATTTAGGGACAGTTTTTACCTGGTTAAAGCAAACCCTgccaaattaatttcagatactTATTGAGGAAAGCGGGAGCCCATTTCTATCACATTCTGTTAGACTCCATTTGTATATCCTGCTAACCTCCTGTTTCTCAGACTACTGTACTACCATGGAGAACTGATCATGACTCTCTGTATAAGGTACTAGTTATCattctgctcttgctttttCTGTGCTGTGCACTTCATACTTTGTattcatacaaatacaatgtaatattcATATTGTAATCTACTGTACCCTTATACAAACTTGTAAATCATCTTTGTTAAAGCTATGTGCTCAATGAATACAATAACTAAAAATCAGTTAAGAAgacaaagaaagcaaaagacTAGACTTCTGATGACGTTTGCTTTTGAAGGTGcgagaaaaaaaaggttttgtgcAATACTGACGATCTCTTTCTGCAAACCATGAAGCCAACTGCATCCCCACGCTAATTGTATCAGGAGCAGTTTATCTTCCTAAGACTGGCGGTAACAGACTGGCCAGCCCTGGGGCCCCACAAACACAACTGCTTTCCACAGTCTTATCTTTCCTGTTGGTCTCCCGCCAACACACTCTCAAAAGGTGTCATGTGCTCTTGTGAGCAATCACACAGCACAATAAACTAGAAACCCTTTATGTTCTTGTTGTTGCATTCTGCAAGTCAGGAAATCCCGTTTATTCATACTAACAAAACCCATGACAGTTATGATATTGTGGCTAAGCTGGTCTGCAATTTCAATACCAATCTGAGGAGTTGCAGGTGTAGAATGGGTATGATTGGCAGGAAATGTACTGCTAGCTTGTCCATCCCCTTTAGCTAAAAAAAATGAAGCCTACTCTTTCAAAATTCTGTTGACTCAATGCCAAAAGAGTGCAAAATATATCAGGAGCTCTCTGGCCTCCTCTAGTGGTCTAATGATAAAGTACACTATTTTCACGATATTAGCTGTTTATTGGACAGCTAGTGCCATTTAAAATCTAGTGCcgttttctcaaaataaaatgatatcaTGGCAAAGATAACAACAAAATAGCATTTTAAAGCAACGGCCCAAATCTAACAGTATTAGCAGATTTTGAAGAGCGGCTCCTTTCCAAATGTGTGCCTTTAACgtgttgaattattattattattttttattattattattattgcagcaCTCATAAGGTACTTATGCATCTCAGCTGGGTTCAAATGTAACGATTACAGCGGAAGAGTGGAAAAACGAAatgtgacaaaaacattttccgCTAGtaagggaaacaataaaaatcgGAAATAATCTAACGTTTTTGTCACGGCAATGGTTATGcaagaggggaaaataaatggtaGAGAATGCAAAATTACACGAGCCTCGGTCTGCCCGCAAATATTAGCCGCACCTGAGGTAACAGCGacagatataaataaacacatatatatgtcaTGGTTGAAGAGGAAGATAGAAATCAGCCTTAACAACACCTTTCTTCctacacaaacagaaaaatggcatatcagcttttgttgtttttctgcctgTTATCGTACTCATaccacaaaatgtatacatatgtatctATAATTTGGTATATACCTTTTAATTCTGAAGGAGCTAAGCAACTGCCGTATTACTTTCAGGACTTTTGACGAGTTTCAGAGGGAGAAGGAATCAATGCGgattaaataaagcacattttaaaagggaaactTTTATTctatgccccccaccccccacctcttcTCCAGGAGAATTGCAGGCTCCATTTATTAAGTTTATGGAAGACACATCACACAATTACATTGAAAACAGTTGCTCTACAGTTTTCATAGGCGGTACAACAGCACTTCTGCAGTTAATAATGTAAATCTGTTACCAGAACTGTCCATTACAAGGTGGGGAAAATAaagattgaaaagaaaaaaaaaactaataataaaaaaatgtacaatgtgGTGTTTCAATGGCCTTGTTCCAGCTAAAAATAAGTAACTATGTATAATGAATCTATAGAAGTTGGAGGAAATATGGTTGGTTAAACCTTACTAGCTACCTATCTTGGATTACCTACCTTAGCTTGTCCTGCTTGGTGTAAACTGCAGAAAAGACTGTTGATTGAACAAGGAAGCACACTACACCAGAAATAATTAAGATTCTTCTCCTCTCTCAGCGCCTCTACTTTCCTAACCTGTCACGGCACCCGGGGCCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU37686 True 3693 lncRNA 0.36 1 51006377 51010069

Neighbor

gene id symbol gene type direction distance location
AMCG00008296 NA coding upstream 424194 50562754 ~ 50582183 (+)
AMCG00008294 NA coding upstream 546323 50451310 ~ 50460054 (+)
AMCG00008292 NA coding upstream 602419 50366444 ~ 50403958 (+)
AMCG00008291 NA coding upstream 646512 50358987 ~ 50359865 (+)
AMCG00008283 NA coding upstream 1125025 49879979 ~ 49881352 (+)
AMCG00008304 NA coding downstream 323234 51333303 ~ 51336685 (+)
AMCG00008309 NA coding downstream 525401 51535470 ~ 51542896 (+)
AMCG00008308 pfdn4,pfd4,LOC107697845,LOC107758785 coding downstream 542537 51552606 ~ 51560087 (+)
AMCG00008310 NA coding downstream 642295 51652364 ~ 51657000 (+)
AMCG00008316 NA coding downstream 1256364 52266433 ~ 52311801 (+)
G30104 NA non-coding upstream 208058 50798120 ~ 50798319 (+)
G30102 NA non-coding upstream 214087 50792075 ~ 50792290 (+)
G30099 NA non-coding upstream 254070 50750380 ~ 50752307 (+)
G30083 NA non-coding upstream 450788 50555384 ~ 50555589 (+)
G30078 NA non-coding upstream 470390 50535774 ~ 50535987 (+)
G30139 NA non-coding downstream 58071 51068140 ~ 51068707 (+)
G30146 NA non-coding downstream 168110 51178179 ~ 51178383 (+)
G30158 NA non-coding downstream 369499 51379568 ~ 51379793 (+)
G30164 NA non-coding downstream 410578 51420647 ~ 51423538 (+)
G30165 NA non-coding downstream 414594 51424663 ~ 51424950 (+)
AMCG00008288 ube2v1,LOC103467757,LOC101171992,LOC103139104,LOC103354371,LOC107090722 other upstream 649973 50322713 ~ 50356404 (+)
AMCG00008279 NA other upstream 1147801 49839512 ~ 49858576 (+)
AMCG00008271 NA other upstream 1587631 49404856 ~ 49418746 (+)
AMCG00008270 ttpal other upstream 1711018 49288246 ~ 49295359 (+)
AMCG00008263 NA other upstream 1835360 49163816 ~ 49171017 (+)
G30166 NA other downstream 416512 51426581 ~ 51428055 (+)
G30232 NA other downstream 1090693 52100762 ~ 52101524 (+)
G30299 NA other downstream 1368260 52378329 ~ 52378776 (+)
G30300 NA other downstream 1371272 52381341 ~ 52382418 (+)
AMCG00008334 prex1 other downstream 1981216 52991285 ~ 53087480 (+)

Expression


Co-expression Network