G30297


Basic Information

Item Value
gene id G30297
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 52377459 ~ 52377854 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU37871
cgtagttatttaatgtctgactaataATACTAACGAGAGACTCACCCTCGTCTTTCTAACCGGTATtatagtcaatgtgtttataaccttttttgtttaacgatctgtgtgtcatcatatgcgatcccatggtctttgatttggtcacggaagtgatttgtctttgatttgttgatctagatttgaattttaattagtttttcccttttgtataattagtgtagtgctacatttagtctttgtttttgaataaatttgacaatttatatctttggaattggtgtctgtgtccaattattacagaaattgagttctacaagattccaggattcgtgataaggtgatactataaattcacttcttaaattgaaatttataagtgtaccttacgctaca

Function

GO: NA

KEGG:

id description
ko04966 Collecting duct acid secretion
ko04721 Synaptic vesicle cycle
ko05110 Vibrio cholerae infection
ko05120 Epithelial cell signaling in Helicobacter pylori infection
ko05323 Rheumatoid arthritis

RNA

RNA id representative length rna type GC content exon number start site end site
TU37871 True 396 lncRNA 0.31 1 52377459 52377854

Neighbor

gene id symbol gene type direction distance location
AMCG00008315 NA coding upstream 1154 52372298 ~ 52376305 (+)
AMCG00008320 NA coding upstream 62276 52311889 ~ 52315183 (+)
AMCG00008316 NA coding upstream 65658 52266433 ~ 52311801 (+)
AMCG00008310 NA coding upstream 720459 51652364 ~ 51657000 (+)
AMCG00008308 pfdn4,pfd4,LOC107697845,LOC107758785 coding upstream 817372 51552606 ~ 51560087 (+)
AMCG00008326 NA coding downstream 70095 52447949 ~ 52483301 (+)
AMCG00008328 snta1 coding downstream 159426 52537280 ~ 52551487 (+)
AMCG00008327 NA coding downstream 182482 52560336 ~ 52566145 (+)
AMCG00008330 LOC106572151,LOC106524167 coding downstream 212677 52590531 ~ 52608548 (+)
AMCG00008336 LOC106565273 coding downstream 540566 52918420 ~ 52953125 (+)
G30283 NA non-coding upstream 40192 52337044 ~ 52337267 (+)
G30269 NA non-coding upstream 88336 52288890 ~ 52289123 (+)
G30219 NA non-coding upstream 588312 51788910 ~ 51789147 (+)
G30206 NA non-coding upstream 789914 51570722 ~ 51587545 (+)
G30205 NA non-coding upstream 805901 51564113 ~ 51571558 (+)
G30232 NA other upstream 275935 52100762 ~ 52101524 (+)
G30166 NA other upstream 949404 51426581 ~ 51428055 (+)
AMCG00008288 ube2v1,LOC103467757,LOC101171992,LOC103139104,LOC103354371,LOC107090722 other upstream 2021055 50322713 ~ 50356404 (+)
AMCG00008279 NA other upstream 2518883 49839512 ~ 49858576 (+)
AMCG00008271 NA other upstream 2958713 49404856 ~ 49418746 (+)
G30299 NA other downstream 475 52378329 ~ 52378776 (+)
G30300 NA other downstream 3487 52381341 ~ 52382418 (+)
AMCG00008334 prex1 other downstream 613431 52991285 ~ 53087480 (+)
AMCG00008335 NA other downstream 733149 53111003 ~ 53148134 (+)

Expression


Co-expression Network