AMCG00009429


Basic Information

Item Value
gene id AMCG00009429
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37530822 ~ 37605124 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009429
ATGCACAGAGCCCAAGGGCCTGGCAGCAGCAGCTGGGGCATGGCTGTGGGTGTGGGCAGCGTCTGTGCCGTGCTGATGGTGGTGCACGTGGCCCTCGTGCCCCTCCTGGCCGTGGGCATGACCTTTGCCATGGTGATGCCCATGCTTGTGTCCGTGATGCTCGTGGCTCTCGTGCCCCTCCTGGCCGTGGGTATGGGCAGGGTCTTTGCCATGGTGATGCTCGTGCTCATGCAGGTGGGGGTGCTGGTGTTCGTGATGCTCGTGGCTCTCGTGCCCGTGGACATGGGCAGTGTCGTTGCCATGGTGATGGCTGTGCTCCTCGTGGGCACCGTCGTCTTTGGCCTTCAAGTGCTTCTTCTTCTCAGCCTGGGATGCCTGGAACacatagcacacacacacaggctgctcAGAACACCAACacgcagcacacacacacacgctgctCACAGCACCAACACGCAGCACACTGATGGGCACTACTCACGACAGGCTAACTCCGCAGCCGCCAGGGCATGGGGGTCCTCGCAGGATCCGGGCTGCTCCGCGGCGGGGGCGGCGGTCTCGGCTCTCACCCAGCCACTCAGCAGCTGGGCGCACAGCAGCAAGCACACATACTGCTTCATCCTCTCACAGCTCAGCACAGGTCCAGTAGTCCACTGCTTACAAGATGGAGCAATACCGGACCATATTTATACGGTGCGTTATCTAGTAACCCCTGTGGCTCCCAGCATGACCCGGACTTTGCTCGGCACTGATGAGAAATCTGCAAATAAGACCTTCATGGTGATTCCGCATTGCattgtgggggagagagagaaacacttaGTTCATGCTGGAAGACGGTCACCCTACTATGTCGATGGGGTGGTGGAAGAGTGGGTCCTCTCCAAAGAGCTCCTGCAGCAGGGGATGCACATTTTTGGGCTTTCCTGGACACCTCATAGAGAGGGTGCTGGGAAAGGGCAAGAAGACTGGATCCTCCTCACCAGTCTCCGGCACTGTCTCGGGAACAACCAGGATGCCAGTGGGATTGGCAGGCTGCTCCCTCTCTGGCTGGTCTGGGAAGATGGGCAGGGGCACGGGCTGGGCGGGGAAGGAAGTGGGGTACTCATCGTGGAAGGAGGGCAAGGTGAAGAGCTGCTTCAGAGCAGGGAGGTACTGCACTGTCCCCAGCGGGCGCTCGGGAGTTGGGGAGGTGGGTGCAGCAGGGGTATGGTCGTGGTGGTGTTCGTGGGGATGAAGGTGAGTGTGTCGATGCCGGTGTCCCAGGCGTCCCCCGTGACTGTGGCCCGTCTCCAGCAAGCGATGACAACTTACTGCAAACTCGCAGCTCATCAGTTCACATTCGGCAACGTGGATGATGTCAGTGCCATTGGAGCACACCGTTTCCTGAATGATGAATTCCACAAAGTAGAATTCACCGAAATCCCACTAGAAGCAGATGGTGGAGGGGCGGTTCAAGCTGAAGACGAAGCCCTCGCTGCGGTCAGTGTTGATCTTGCCCAGGGCCAAGTCTGCAGCTGCCAGGGCGTGGGGGTCCTCACAGGAGCCGGGGTGCACGGGAGAGGCACGCCACCTCCCCACAGTGCTGCAGCCACGGCCTGGCATTCAGAGCTCGGGCAGCAGGATGTCATGGGTGGCGAGTCTTGCCCGGGCAGGTACTTGGGAATGGTGGAGAGTGATGTAGCAGTGGGCTGTCCGGTGCCAGGCTGGGGAGCTCTTGAGCATGGTGGGGGGGTCCTTGGGGATGTTGTGGGGGGTGTCCTTGGGGTGGGTGGTGAGGTGGTCCatgaggagggggtgggggatgaTGGAGGAAGGGGGGGCCCATTGGCATGTGGTGAGGAGTCCAATGTGTGGGGTGTGGGTGAGGCCAATGTGTGGGGTGTGGGTGAGGCCAATGTGTGGGGTgcgggtgggggtgggggtgtgggcCTGGGCGTGGatgtgggtgggggtgggggtgtgggcATGGGTGAGGGTGctggtgtgggtgtgggtgtgggccTGGGTGCGGGTGTGGGTGTGGGCCTGGGTGCGGGTGTGGGTGTGGGCCTGGGTGCGGACATGGGTGTACTGCGTGTGAATCAGTGCACTTACAGCCTGGCTCTCATTGAGGGCAACACATTTCTCTTCATCCTCGGGCTTCACCTGGTCTGTGCAGTCAGTCTCCACAATGGCAAATTCAGCAAAAAGCCCACTCTACCCACCTCTCTGAGCACACTGTTGTCTCTGATTGTATTGAGTGCATATTTGTACCCGTGGTGGTGCTCGGCGTTGATGAGCTCCAGTGCTGCCCGAGCAGCTTCCTCCACCTCGGGCGAATCGCAGGCTATGAGGCGGAATGGTAAGGCAACCACAGGAGGTGCCAAGGAGACTCCAACTCCAGCATCAACAACTGCCGGCGCCTCGGAGGGAGCAGAGGGAGCATTTGACGGCGACTCCACCACTTGGTCCATCACCTGTCTCTTCACTTTCACTGGCGGCACAGCCTCTGCAGACTCGGAGGAGAGCAGGGCCGTGAAAGCCCAGGCCGTGGGTTTTGAAGTCATGGTGGGCTGGGTGATGGTGGTGCCCAGCGCTACCCCGGATATGATAGTGCACAGTGTGGGGATGAGCGGGCTCGGTGTCATTTGCCATAATCGGGAGCGCCGGGCCCTGGAACACAGGAGGGAAGGGAGAACTGGATACCTGTGCAGGAAAGATGTCACAGTCCACGGTTACATTATCCAAATGATCCCCTGGGCGCAGGCTGGCCTTGCAGAAGCCGTGGCGCTGGAAACAGAGAAACAGGATGGATTTAGAGGGGCCAGCCTCAGACGGAGCCAGGGGGACGCAGTGGTCATGGTGATCCTCGGCAGCGAGGCTGGTGCAGTTCGTCTCCACAATGGCGTACTCGACAAATGCGAACTCTTCCGGCTCGGGCAACTCTACGTTAAACTTGTGGAGCGACTTGGTGATGGCCTGCTGACCGACGCTGTCGTTGAGAGGGATCAGGGTGTATTTGTATCCATGGTGGTGCTGGGTGTTGATGTGGTCGACGGCCACCTGGGCAGCTTCCTCTGCGTCCGTGGAGTCGCAGGGCAGGTGGCGCACATTTGGGACCCCAGCGGTCAGATACTTGTGTTTGGCAAAGTCAGTGCAATCCCAGTGCTTAACCTGAGCCCCAAAGTCAACTCCGAGCTGCTGCGCCAACGCGTAACTGAGCCAAAAGGGACAGCAGGGCGCACAGGGCTGTGGCGAAGGGAAGACGCTAAAGGCACCACGTTTGCTGTCTATGAACAGGATGTTACTCTGCCAGATGAGCCTGCTGTTGTGGGGCAGTCTGTTGCCGAGGACGGGGAGATCTCGGAGATGATCAACAGTGCGCGGTGCACCTCCCGCTGCCTGGCTCTGCACATCACCCTGCTCAAGCACACCCAGTTCTGTGGGTGGGGAAGTAACAGGAGGACCCTGTTGCAGACTGTCTGGATGAATTGCTGTGCTGATGttgaggctgtgctgctggctATGGTTGAGCCCCTGATCTTTGCCCACCTGCGTATCTGGACTGCTAATGAGAGTGGGCTGCAGAGCACAACAcaggggagGAAAACGGAGCCCCAGGAGGCACCTCCACAGGAGGGTACACCTCCGCTGGACAGGaGCAGGTTTCCTGAGCACATCTTACAAAACAGATTGATCCTGGGCTCTTGTGCCTTGGCTAGGCAGGCCAGATGTTTCACGGCCTGTTTTGACACCAGGAGACTGCGACCCGTCAAGCACAGGGACCCCTGTTTTGTCTACCGCTCAATAACGAACTGCTTCGGAAACCGATCGACCTGTCAGGCTACACGGGCATTCGCAGGGTTTGCTTTGATTAAGCGTCCGTTACTTCAACTTCAAGTTCTTGTGCGGCCAGCTGGGTCATCCAGACAGCTGCAGCCCCTGTTCTCCCACTGTCCCCAGCTGAGGGCTGTCATCACGCTGTCTGTGCCACTCTACCCAGAGCCCAGCAGAGAATGTGAGCTGTTCTGCGGTTGTGTAGGCATGTGTAAACCTTTAAATTCACTTGATACGAATGGAATTTCGCAACGCTTCTCTCCAATGAAGGATGCAGCTTCACATGTGGTTTCTTTCACGAAGCACCACGAGTGTGTGACCAGCTACGAGTTCCTCATGTCCATCCAAGCCCAGAAGCAGGGAGACTGCCCACCCCCCCAGAAGGCCTCGGGTTTTGCGGCCGCCTGTGTGGAGGGCTGCAGTGAGGACCGCGAGTGCTCCGGACACAGGAAGTGCTGCTCCAACGGCTGTGGCCACACCTGTGTTCCTCTGAAGCCCAGGAAGGACATGACGTTCCAGGAGGCGGCGGACGGGCAGGTGGAGGTGTCCTGGATGTCCAAGTTTAATGTGTCTGTAGAGCCCGTGCTCTATGTCCTGCAGAGACGCTCGAACTATGGCATTCACCCCAGTGAGGACGAGGCCACGCCCTGGCAGAATGTCGTCATGACCCCAGAGGAGCGGGCGGTGCTGGAGGACATGCGACCGCACCGCTGGTACCAATTCAGAGTGAGTGCCGTCAACGTCCACGGCACACGCGGCTTCACCACACCCAGCAAGCACTTCCACTCATCCCGAGACCCTGTCCCGCCTGAGACCCCAAGGAACATGAGGAGGGGAAATTTCACAATGAGAGGCgatgggtgtgtgggtgtgagggTGTCGTGGGACGTCCCGCAAGAGGAGGACCTCCCCGTTCACCACTACAAGGTGTACTGGAGCTCCCAAGCACCCCCCCGCAGAGTGGGGCTAGCTGACCAGAAGGAAAACTCCAAATCCACTGAGGGGGTTGCTCCTGAGGTTGATCTTGAAGGGCTACAGCCCAACACGGTGTACCTGGTCCAGGTGCAGGCCATTGCCTACTGGGCACAGAAACGCCTGAAGAGCAGGAAGGCCCAGCTGGTCCTAACCACACCTCCCACAGATTCCCCTGGCAGCCCTGCCCAGGGCCGGCCGACAGGTGAGGTGTCCAACGAGCTGCCTGGCTCTCCCACTGTGCCCAGCCTCCTGAGGATAGACGCTGCTGCCCCGCACTACCACAGCAACCAGTTGCAGGGTACTCACTTTGTTATCACTGGCCTGGAGTTTGCCTGCAAGTACAGTGTGTCGGTGAAGCCCGTGTCCACGACAGGCCCGGGGTCGGAGGTTGTGACCTCTGTCACTACCCCGCCGTGCTCCTCGGTGAAAGGCAGGGGGGCGAAGTCTCTGTCCTGTGGGCGAGAGGATCGCCACCTGCTGGCCAGGAAGATAAGGCTGCGGCCGGAGAGGCTGAGCGCAGCCTTCCAGACAGTGAACGGCTCAGTGTGGGGGCACTTCCAGTGGCAGCTGTCCCTGACCCCCCCGCCATCGCTGGCAGGGTTCCAGGATCAGCTGTCCCTGTCTGTGGAGCACCTGCAGGCCGACAGCGTGTACAAGGTGCAGGTGCAGCTGTTGACCCCCACAGGTGGCGGCCCGGCCATCGTCAAGATTTGGGACTTAACATCATACTGA
>TU71098
CTCTCTGAGCACACTGTTGTCTCTGATTGTATTGAGTGCATATTTGTACCCGTGGTGGTGCTCGGCGTTGATGAGCTCCAGTGCTGCCCGAGCAGCTTCCTCCACCTCGGGCGAATCGCAGGCTATGGTGGAAGGTCTTGGCAGAGGTCGGTGGAACACGGGGGGTAGGGGTGGTAAGGGGGGCAGAGGGATAAATAGCGTAGCGTTGATTGTCTGGAGCAGT

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05020 Prion disease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009429 True 5529 mRNA 0.60 34 37530822 37605124
TU71098 False 223 lncRNA 0.57 2 37548313 37553141

Neighbor

gene id symbol gene type direction distance location
AMCG00009419 NA coding upstream 9369 37520323 ~ 37521453 (+)
AMCG00009421 NA coding upstream 14342 37505763 ~ 37516480 (+)
AMCG00009418 NA coding upstream 31636 37495000 ~ 37499186 (+)
AMCG00009420 NA coding upstream 38333 37477190 ~ 37492489 (+)
AMCG00009414 commd2 coding upstream 112867 37413764 ~ 37417955 (+)
AMCG00009427 NA coding downstream 14378 37619502 ~ 37621390 (+)
AMCG00009438 NA coding downstream 426261 38031385 ~ 38059273 (+)
AMCG00009444 NA coding downstream 487276 38092400 ~ 38094123 (+)
AMCG00009443 gnb4,LOC108270972 coding downstream 520184 38125308 ~ 38129404 (+)
AMCG00009442 NA coding downstream 542851 38147975 ~ 38150946 (+)
G56775 NA non-coding upstream 239157 37285843 ~ 37291665 (+)
G56754 NA non-coding upstream 335734 37193726 ~ 37195088 (+)
G56747 NA non-coding upstream 342044 37188568 ~ 37188778 (+)
G56712 NA non-coding upstream 501280 37029206 ~ 37029542 (+)
G56694 NA non-coding upstream 555761 36900293 ~ 36975061 (+)
G56982 NA non-coding downstream 458666 38063790 ~ 38068153 (+)
G56995 NA non-coding downstream 524958 38130082 ~ 38133966 (+)
G57036 NA non-coding downstream 597670 38202794 ~ 38280479 (+)
G57161 NA non-coding downstream 1022795 38627919 ~ 38628135 (+)
G57164 NA non-coding downstream 1027973 38633097 ~ 38633351 (+)
AMCG00009415 wwtr1,LOC107588432,LOC107732229,LOC107662944,LOC107572084 other upstream 67317 37422017 ~ 37463505 (+)
AMCG00009405 pfn2,LOC105899220,LOC106598797,LOC105028925 other upstream 163151 37348108 ~ 37367671 (+)
AMCG00009404 NA other upstream 233813 37293903 ~ 37297009 (+)
G56536 LOC100846954 other upstream 2141495 35388914 ~ 35389327 (+)
AMCG00009345 NA other upstream 3161565 34363419 ~ 34369257 (+)
AMCG00009428 NA other downstream 3181 37608305 ~ 37616696 (+)
G57105 NA other downstream 837131 38442255 ~ 38457592 (+)
AMCG00009480 sst1.1,LOC106579799,LOC105009822,LOC107586749,LOC103023622,LOC107582287 other downstream 1829776 39434900 ~ 39437017 (+)
G57430 NA other downstream 2342882 39948006 ~ 39949200 (+)
AMCG00009516 NA other downstream 2481350 40086474 ~ 40105052 (+)

Expression


Co-expression Network