AMCG00009509


Basic Information

Item Value
gene id AMCG00009509
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 40071239 ~ 40072287 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009509
TCAGTTCAGCTAATATCACTGCAGGGAGCTTTCCCAGCCaagagccttttttttttttttaaagtgttgacCTGGGTCAGTGTGAGCGAGCGAGGCTGTGCCAGACAGGGAATGCTCAAGTTGTGTAAGATCACCGACTCGTTGCTCATCAGCAATGCCAGGTCGGCCTGCAGCGACGAGCTCATCAGACAGGAGGGCATCACGCTGTGCATTAACGTGTCAGTGCAGCAGCCCTTCCCCAGCGCCCGGGTCAGCACCCTGCGCGTGCCTGTGTACGACGACCCAGCCGAGAACCTCTACCGCCACTTCGACCGCTGCGCCGACGCCATCCACAGCGCCGCCAGCGGGGGAGGGCGCAGTGTGGTGTACTGCAAGAACGGGCGCAGCCGCTCCGCCTCCATCTGCATGGCCTACCTCATGAAGCACCAGGGCCTCTCACTGTCACAGGCCTTCCAGGCTGTGAAGACGGCGCGCTCAGTGGTGGAGCCCAACAAAGGGTTCTGGGAACAACTGCAGAAGTATGAgaaggagctggagaggaggaggacggCAGACAGTGGCACGGGGGGGGGCAGTCTCCATCAGGCAGGTTCCCAGGACACAGATGGGGAGGCCCAAGCTGGACTATGA

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0000188 inactivation of MAPK activity biological_process
GO:0017017 MAP kinase tyrosine/serine/threonine phosphatase activity molecular_function

KEGG:

id description
K14165 K14165; atypical dual specificity phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009509 True 630 mRNA 0.60 2 40071239 40072287

Neighbor

gene id symbol gene type direction distance location
AMCG00009512 NA coding upstream 41779 40028792 ~ 40029460 (+)
AMCG00009510 polr2d,rpb4,LOC106612892,LOC107671669 coding upstream 45800 40022081 ~ 40025439 (+)
AMCG00009503 NA coding upstream 89192 39967297 ~ 39982047 (+)
AMCG00009505 NA coding upstream 132958 39930146 ~ 39938281 (+)
AMCG00009506 NA coding upstream 141106 39922934 ~ 39930133 (+)
AMCG00009515 NA coding downstream 68182 40140469 ~ 40142280 (+)
AMCG00009514 rpp21,LOC107653575,LOC107588084 coding downstream 100679 40172966 ~ 40179050 (+)
AMCG00009525 LOC106584350,LOC105907042,LOC106599532 coding downstream 116854 40189141 ~ 40203113 (+)
AMCG00009524 NA coding downstream 140361 40212648 ~ 40220369 (+)
AMCG00009530 NA coding downstream 339926 40412213 ~ 40420872 (+)
G57457 NA non-coding upstream 37906 40030546 ~ 40033333 (+)
G57428 NA non-coding upstream 128203 39941222 ~ 39943036 (+)
G57401 NA non-coding upstream 196069 39874881 ~ 39875170 (+)
G57378 NA non-coding upstream 264311 39806583 ~ 39806928 (+)
G57329 NA non-coding upstream 611563 39459398 ~ 39459676 (+)
G57523 NA non-coding downstream 87122 40159409 ~ 40159626 (+)
G57544 NA non-coding downstream 267095 40339382 ~ 40343381 (+)
G57597 NA non-coding downstream 756785 40829072 ~ 40829677 (+)
G57599 NA non-coding downstream 860680 40932967 ~ 40933210 (+)
G57690 NA non-coding downstream 1427677 41499964 ~ 41500218 (+)
G57430 NA other upstream 122039 39948006 ~ 39949200 (+)
AMCG00009480 sst1.1,LOC106579799,LOC105009822,LOC107586749,LOC103023622,LOC107582287 other upstream 634222 39434900 ~ 39437017 (+)
G57105 NA other upstream 1613647 38442255 ~ 38457592 (+)
AMCG00009428 NA other upstream 2454543 37608305 ~ 37616696 (+)
AMCG00009429 NA other upstream 2466115 37530822 ~ 37605124 (+)
AMCG00009516 NA other downstream 14187 40086474 ~ 40105052 (+)
G57604 NA other downstream 918515 40990802 ~ 40994659 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other downstream 1523942 41596229 ~ 41599124 (+)
G57830 NA other downstream 1963731 42036018 ~ 42078241 (+)
AMCG00009647 NA other downstream 3364703 43436990 ~ 43444420 (+)

Expression


Co-expression Network