AMCG00009510 (polr2d,rpb4,LOC106612892,LOC107671669)


Basic Information

Item Value
gene id AMCG00009510
gene name polr2d,rpb4,LOC106612892,LOC107671669
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 40022081 ~ 40025439 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009510
ATGGCGGCAGGAGCGACCGCCGCCACGGCTAACGTCGGCGATATCGAGGAGGACGCGTCGCAGCTGCTCTTCCCCAAAGgtacacctCCTGGCCTCTGCCCTGCAGAGTTCGAGAACGCGGAGACGCTGCTGAACTCCGAGGTGCACATGCTGCTGGAGCATCGCAAGCAGCAGAACGAGAGCGCGGAGGACGAGCAGGAGCTGTCCGAGGTCTTCATGAAGACGCTCAACTACACGGCCCGCTTCAGCCGCTTCAAGAACAGAGAGACCATCGCCAGCGTCCGCAGCCTGCTGTTACAGAAGAAGCTCCACAAGTTTGAGCTGGCCAGCCTGGCCAACCTGTGCCCTGAGGCGGCTGAGGAGGCCAAGGCCCTGATCCCCAGTCTGGAGGGTCGCTTTGAAGACGAGGAACTGCAGCAGATTCTGGACGATATTCAGACCAAGAGAAGTTTCCAGTATTGA

Function

symbol description
polr2d Predicted to enable translation initiation factor binding activity. Predicted to be involved in RNA metabolic process; mRNA export from nucleus in response to heat stress; and positive regulation of translational initiation. Predicted to act upstream of or within DNA-templated transcription, initiation. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II, core complex. Predicted to be active in P-body. Is expressed in several structures, including blastomere; eye; heart; liver; and pleuroperitoneal region. Orthologous to human POLR2D (RNA polymerase II subunit D).
rpb4 Enables translation initiation factor binding activity. Contributes to RNA-directed 5'-3' RNA polymerase activity; single-stranded DNA binding activity; and single-stranded RNA binding activity. Involved in RNA metabolic process; mRNA export from nucleus in response to heat stress; and positive regulation of translational initiation. Located in P-body and nucleus. Part of RNA polymerase II, core complex. Orthologous to human POLR2D (RNA polymerase II subunit D).

NR:

description
PREDICTED: DNA-directed RNA polymerase II subunit RPB4

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K03012 RPB4, POLR2D; DNA-directed RNA polymerase II subunit RPB4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009510 True 462 mRNA 0.60 4 40022081 40025439

Neighbor

gene id symbol gene type direction distance location
AMCG00009503 NA coding upstream 40034 39967297 ~ 39982047 (+)
AMCG00009505 NA coding upstream 83800 39930146 ~ 39938281 (+)
AMCG00009506 NA coding upstream 91948 39922934 ~ 39930133 (+)
AMCG00009504 dgkd coding upstream 99973 39884002 ~ 39922108 (+)
AMCG00009498 NA coding upstream 149359 39865728 ~ 39872722 (+)
AMCG00009512 NA coding downstream 3353 40028792 ~ 40029460 (+)
AMCG00009509 NA coding downstream 45800 40071239 ~ 40072287 (+)
AMCG00009515 NA coding downstream 115030 40140469 ~ 40142280 (+)
AMCG00009514 rpp21,LOC107653575,LOC107588084 coding downstream 147527 40172966 ~ 40179050 (+)
AMCG00009525 LOC106584350,LOC105907042,LOC106599532 coding downstream 163702 40189141 ~ 40203113 (+)
G57428 NA non-coding upstream 79045 39941222 ~ 39943036 (+)
G57401 NA non-coding upstream 146911 39874881 ~ 39875170 (+)
G57378 NA non-coding upstream 215153 39806583 ~ 39806928 (+)
G57329 NA non-coding upstream 562405 39459398 ~ 39459676 (+)
G57287 NA non-coding upstream 715307 39306488 ~ 39306774 (+)
G57457 NA non-coding downstream 5107 40030546 ~ 40033333 (+)
G57523 NA non-coding downstream 133970 40159409 ~ 40159626 (+)
G57544 NA non-coding downstream 313943 40339382 ~ 40343381 (+)
G57597 NA non-coding downstream 803633 40829072 ~ 40829677 (+)
G57599 NA non-coding downstream 907528 40932967 ~ 40933210 (+)
G57430 NA other upstream 72881 39948006 ~ 39949200 (+)
AMCG00009480 sst1.1,LOC106579799,LOC105009822,LOC107586749,LOC103023622,LOC107582287 other upstream 585064 39434900 ~ 39437017 (+)
G57105 NA other upstream 1564489 38442255 ~ 38457592 (+)
AMCG00009428 NA other upstream 2405385 37608305 ~ 37616696 (+)
AMCG00009429 NA other upstream 2416957 37530822 ~ 37605124 (+)
AMCG00009516 NA other downstream 61035 40086474 ~ 40105052 (+)
G57604 NA other downstream 965363 40990802 ~ 40994659 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other downstream 1570790 41596229 ~ 41599124 (+)
G57830 NA other downstream 2010579 42036018 ~ 42078241 (+)
AMCG00009647 NA other downstream 3411551 43436990 ~ 43444420 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015112 polr2d coding NC_007113.7 CM002886.2 1124512 ~ 1129721 (+)