AMCG00009536 (LOC104966469,LOC106907045,LOC107600086,LOC103359190)



Basic Information


Item Value
gene id AMCG00009536
gene name LOC104966469,LOC106907045,LOC107600086,LOC103359190
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 40705526 ~ 40711491 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00009536
GAATGCCGTGTTGCCCTGAGGAAAACCGCTGAGGTGATGACACTGGTCTGCTCTTTGCCGTTGCAGGGCGGGAAGATCCCAGTGCGATGGACGGCTCCCGAAGCCATCGCCTACAGGAAGTTCACCTCCGCCAGCGATGTGTGGAGCTACGGCATCGTGATGTGGGAGGTGATGTCCTTCGGAGAGAGACCCTACTGGGACATGTCCAACCAGGACGTCATCAACGCTATCGAGCAGGACTACCGGCTGCCCCCACCCATGGACTGCCCAGCCGCCCTGCACCAGCTCATGCTCGACTGCTGGCAGAAGGACCGCAACGCCCGACCGCGTTTCACCGAGATCGTCAACACACTGGACAAGATGATCCGCAACCCCACCAGCCTGAAAGCCGTGGCCACCATCACCGCTGTGCCTTCTCAGCCCCTCCTCGATCGCTCTGTGCCCGACTTCACCACATTCACCTCCGTAGAAGAATGGCTCGGGGCCATCAAAATGAACCAGTACAGAGATAACTTCCTGAGCTCCGGCTTCACTTCCCTTCAGCTGGTGGCACAGATGACCTCTGAAGACCTCCTAAGGATAGGGGTGACTTTAGCCGGCCACCAGAAGAAGATCCTTAACAGCGTCCAGTCTATGAGGGTACAGATGAGCCAGTCGCCGACCTCCATAGCATGA

Function


NR:

description
PREDICTED: ephrin type-B receptor 1

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00009536 True 675 mRNA 0.58 4 40705526 40711491

Neighbor


gene id symbol gene type direction distance location
AMCG00009535 LOC106599529,LOC106568848,LOC103359190,LOC108430182 coding upstream 11146 40677853 ~ 40694380 (+)
AMCG00009534 LOC106599529,LOC105018039 coding upstream 52708 40644394 ~ 40652818 (+)
AMCG00009533 LOC107384019,LOC106568850 coding upstream 97413 40607136 ~ 40608113 (+)
AMCG00009526 NA coding upstream 242627 40448819 ~ 40462899 (+)
AMCG00009529 NA coding upstream 263929 40436327 ~ 40441597 (+)
AMCG00009539 NA coding downstream 343087 41054578 ~ 41067629 (+)
AMCG00009543 NA coding downstream 379558 41091049 ~ 41091910 (+)
AMCG00009541 NA coding downstream 395222 41106713 ~ 41116745 (+)
AMCG00009544 NA coding downstream 405330 41116821 ~ 41117376 (+)
AMCG00009542 eif4e2,LOC107730458,LOC107692895 coding downstream 412231 41123722 ~ 41132114 (+)
G57544 NA non-coding upstream 362145 40339382 ~ 40343381 (+)
G57523 NA non-coding upstream 545900 40159409 ~ 40159626 (+)
G57457 NA non-coding upstream 672193 40030546 ~ 40033333 (+)
G57428 NA non-coding upstream 762490 39941222 ~ 39943036 (+)
G57401 NA non-coding upstream 830356 39874881 ~ 39875170 (+)
G57597 NA non-coding downstream 117581 40829072 ~ 40829677 (+)
G57599 NA non-coding downstream 221476 40932967 ~ 40933210 (+)
G57690 NA non-coding downstream 788473 41499964 ~ 41500218 (+)
G57770 NA non-coding downstream 1038064 41749555 ~ 41750144 (+)
G57775 NA non-coding downstream 1104430 41815921 ~ 41817795 (+)
AMCG00009516 NA other upstream 600474 40086474 ~ 40105052 (+)
G57430 NA other upstream 756326 39948006 ~ 39949200 (+)
AMCG00009480 sst1.1,LOC106579799,LOC105009822,LOC107586749,LOC103023622,LOC107582287 other upstream 1268509 39434900 ~ 39437017 (+)
G57105 NA other upstream 2247934 38442255 ~ 38457592 (+)
AMCG00009428 NA other upstream 3088830 37608305 ~ 37616696 (+)
G57604 NA other downstream 279311 40990802 ~ 40994659 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other downstream 884738 41596229 ~ 41599124 (+)
G57830 NA other downstream 1324527 42036018 ~ 42078241 (+)
AMCG00009647 NA other downstream 2725499 43436990 ~ 43444420 (+)
G58324 NA other downstream 3221461 43932952 ~ 43935762 (+)

Expression



Co-expression Network