AMCG00009556


Basic Information

Item Value
gene id AMCG00009556
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 41586666 ~ 41588754 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009556
ATGGGCAGCCTAGTGGACTTTGGCTGGGCTGTGTGTCATGACGGTTGGAAGCGATTGGGGTTTGAGGAGATGGAGGGTATTCCCTTCCGGACGCTGGAGTTGGTGTGGCTGGGCTCCAGCGTGGCTTTCTCAGGGCTCTTCTACTACATCTACAGAAGGAAGAGGAAGACGGTGGACAAGCTGAAGGAGGTGCCCAGTGTGCCTCTTGATGAGCATCTGGCTGGTATTTTGAACGCTGTGCCTGGGAAATGTCTGCAGTATGTTGTTATTGAGGGGACGGTGCAGCCTGTGGGGGAGCCCCTGAGGAGCCAGTTTCAGGAGGGCAGTCTGGGGGTGGTGCAGAGACTCGTCCTGAAGGAGCACAAGCTGGTGTGGAATAACTTGGCACGCACCTGgacagacagCGAGAGGACGCTGCACCAGCGGGTCAACACCGTGCCCTTTGACCTGGTGGGCTGGGACAGAGCCGCGGTGAGGGTGCTGTCCCCTCTGGAAGCCTCTGGCCTGGAGATGGAGACAGTGCACGAGAAGTTCCACCAGGCCAGCTTCGGCTTCACGGACATCATCAGCCAGTACCTGAGTGGGGAGAAGCCCAAGGGCCAGCTGGAGACGGAGGAGATGCTCCGAGTGGGCGCCACCCTGACCGGGGTGGGAGAACTCATCCTGGACTCGGACAGGGTGCTCAAACTGCGGCCTCCTGCCGACGGCTCCGAGTATTTCCTCACGACCTCGGACTTCCAGACCATGCTGGCTGAACAGGAGGGACAGGCTACCGTGTGGCGGGTGttgatgtctgtctgtgtggtggCCGGGGTGGCGGCCGTCCTGTGGTTGGCCAGGAAGTACTACATACACCTGCAGGCCAAGTGGGAGATGGAGGAGCTGCGCAGGCAGTTCGAGAGACTGGATGCCAGCCGGACCGCTGCCCCTGGGGAGACCGAGGACCCCGAGCTGCTGGAGAACGCCTGCGTCATCTGCCTGACCAACCCGCGCAGCTGCGTCCTGCTCGAGTGCGGCCACGTGTGCTGTTGCTTCAGCTGCTTCCAGGCCCTCCCCGTTCCCACCTGCCCCATCTGCAGACGAGACATCGTGAGGGTGGTGCCTCTCTACCAGGCGTGA

Function

GO:

id name namespace
GO:0006919 activation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling biological_process
GO:0016567 protein ubiquitination biological_process
GO:0030308 negative regulation of cell growth biological_process
GO:0051646 mitochondrion localization biological_process
GO:0000266 mitochondrial fission biological_process
GO:0005777 peroxisome cellular_component
GO:0031307 integral component of mitochondrial outer membrane cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0042802 identical protein binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15688 MUL1; E3 ubiquitin-protein ligase MUL1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009556 True 1119 mRNA 0.62 5 41586666 41588754

Neighbor

gene id symbol gene type direction distance location
AMCG00009562 NA coding upstream 17834 41560388 ~ 41568832 (+)
AMCG00009554 NA coding upstream 76819 41504994 ~ 41509847 (+)
AMCG00009555 NA coding upstream 87861 41485230 ~ 41498805 (+)
AMCG00009552 NA coding upstream 106670 41476537 ~ 41479996 (+)
AMCG00009550 NA coding upstream 151467 41433263 ~ 41435199 (+)
AMCG00009564 NA coding downstream 89798 41678552 ~ 41683695 (+)
AMCG00009568 NA coding downstream 186455 41775209 ~ 41784537 (+)
AMCG00009569 NA coding downstream 244117 41832871 ~ 41844457 (+)
AMCG00009575 NA coding downstream 313079 41901833 ~ 41910118 (+)
AMCG00009577 NA coding downstream 362913 41951667 ~ 41960909 (+)
G57690 NA non-coding upstream 86448 41499964 ~ 41500218 (+)
G57599 NA non-coding upstream 653456 40932967 ~ 40933210 (+)
G57597 NA non-coding upstream 756989 40829072 ~ 40829677 (+)
G57544 NA non-coding upstream 1243285 40339382 ~ 40343381 (+)
G57523 NA non-coding upstream 1427040 40159409 ~ 40159626 (+)
G57770 NA non-coding downstream 160801 41749555 ~ 41750144 (+)
G57775 NA non-coding downstream 227167 41815921 ~ 41817795 (+)
G57792 NA non-coding downstream 250411 41839165 ~ 41839466 (+)
G57843 NA non-coding downstream 496525 42085279 ~ 42088145 (+)
G57940 NA non-coding downstream 813481 42402235 ~ 42402452 (+)
G57604 NA other upstream 592007 40990802 ~ 40994659 (+)
AMCG00009516 NA other upstream 1481614 40086474 ~ 40105052 (+)
G57430 NA other upstream 1637466 39948006 ~ 39949200 (+)
AMCG00009480 sst1.1,LOC106579799,LOC105009822,LOC107586749,LOC103023622,LOC107582287 other upstream 2149649 39434900 ~ 39437017 (+)
G57105 NA other upstream 3129074 38442255 ~ 38457592 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other downstream 7475 41596229 ~ 41599124 (+)
G57830 NA other downstream 447264 42036018 ~ 42078241 (+)
AMCG00009647 NA other downstream 1848236 43436990 ~ 43444420 (+)
G58324 NA other downstream 2344198 43932952 ~ 43935762 (+)
G58522 NA other downstream 2797743 44386497 ~ 44407568 (+)

Expression


Co-expression Network