AMCG00009575


Basic Information

Item Value
gene id AMCG00009575
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 41901833 ~ 41910118 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009575
GTGTTTTATTAGTGAACTACAGTATTTTAAGCGTCTTTTAGGTTTGCATCATACGGGGCAATTCGAGATGAAACAACAGCGAGATTAGTTGTGAAAAGTCGCCATTGCATTTCTTAATACCACAAGACAACGCCGTCCAGATGGAAGTCGCCGGAGCAGCCGGGGGCTCTGACGTCACAACGCCGCGACCCAGCGAAGGCGACATCAAAACCCACTTCAAAGTGTGCCGCTTCATCATCGAGGCGGGAGTGAAGCTGGGCATGAACTCGGTGCCCATCGCCACGGCCTGCACTGTGTATCACCGCTTCTACCAGAGCGCCAGCCTGCAGGTGTACGAGCCGCACCTAGTCGCCATGTCAGCCATCTACCTGGCGGGCAAAGTGGAGGAGCAGCACTTGCGGACCAGGGACATTATCAACGTGTGCCACAGGTACCTGAATCCCCAGAGCGAGCCTCTGGAGCTGGACAGCCGCTTCTGGGACCTGAGGGACAGCGTGGTCCAGTGTGAGCTGCTCATTCTCCGGGTCCTCAACTTCCAGGTGTCCTTCCAACATCCCCACAAGTACCTCCTGCACTACCTGGTGTCTCTGCAGAACCTCCTGAACCGGCACGCCTGGAGGCGCACGCCCATCGCCAAGACGGCCTGGGCCCTGCTGAGGGACAGCTACCACGGCAGCCTGTGTCTGCGCCACCCCCCCCAGCACATTGCCGTGGCTGTGCTGTACCTGGCCGTGGAGAGCTACGGGGTGGAGGTGCCGGGCGACTCGGGGGCCGGGAAGCTTTGGTGGCAGGTTTTCAGTGACGACTTAACTAAACCCATCATCGACTCCATCATCTCTGAGCTCCTGCAGCTGTACGACCTGGAAGCCAAGTGCATCTGAACGGAGCCGCGTGTGGGAACGGCAGGTAAAGGCAGTGAGTCGGCCCAAGTCGCAGattgtTGGAAATTGCTTGAACCAAGTGGAAGAGAACCTGCCGTTCGTTGTCTTGCACCAAAGCCCTTCCACTGGGAGCGTGAGAACCGGCGCTCTCGCCGCAGAGCCGTGTGCAGACCCGAGGACAGAGCGGCCCAGAAAAGTGATCGCGGTGTGACCCACTGGCGCGGACTTGTGTGCTCTGCAGGTGCGATCACTGTTGTCCTACTTCAGAGACGCTCAGTGTGAAGTGCATGTGGTTCCCATTTTGCCCACAAGAGGGCGGAAGGACTGGACTGCTGTGTTTTGCAGCTCGACAACCTgcgggagaaaaaaaaaacaaaaaaaaactcttctGTGATGTTGCTTTTGGGGGACGGCTGATCCTCTGTGACCTGAGACTTGAGTTTGATGTATAAGGGGCCTGTTAATGCGCAGGACTGCATTTGCATGAATACCAAATGCCGATCTGTGCAACAAACCTCACTTTCCTAGTTTATCCACTACTGTATGAAAGGTGGAAGGCAGATCGGGATGCACAGGACTGCAAAGAACGTTTGTGCATCTCTGTCTGTTCAaccctcctccacctccttccCGTTATTCCCGTTGAGACTAtcagtgttgttgtgtgtgtgcctgtcctgttgtttctctgcatttcttaagtgtgtgtttttaacaaaacacaataaggGAATCGTGCAGCAATGCCCTTAGGGAAACTAATACGACTCCCCTTGCATAACTGTAAAAGCCATTTCGGGTTTTAGGCACTCTGGGCTCTGGTATATAAGCTAGTAGGGGCTGGATATTTCTAACCGCTAACTTTAACAAGTCTTGGCGTGCAAATGTTTGGATCGTGCAGCTCCACTGAGTCAGCACCACAACCTGGAGCTCTCAAAACCCAAAATGATGTTCTTTAATCTGCAGTGGGTCTTTAAACCAGGATTCTTCAAGTTATGAAGCGTCTCTGCCCTGTATTCACTACTGCCATGGCCGGttcattatttgtaaatatatataaataaattggaGTGGTTGGTGTCATCAAATGCTTTTAGTATGTTTATTCAAATTGCTCTGATTGTGCATGTGTGAATCcagtagtatttttaaatattagcgTGCTTAAACTAATGCTATTGCTCAGATGCCTTCAGGCCACTTAAACGAAATGTCCTagtttgaataaatattttaattagttcaTAATTCGTGGATATTGCGAGGATCAACCACAACCACTCCGGTGTCTAAAGAATCTAATCTAGCAGTCCGTTTTCTTCTGTGTGGGAAATAAGAAACTGAGTCACACATTCCTTTAACTGTGTCAATATGGTCATTTTCGATGGTTATTGCTTAATCGTAATCTAAATTCATTCCACATATGTGAACcctagattatttttttttttatgttttgtgtttgaaaacattCCCCTTCCCTCCAGTACATAAACATTTGCTTTGCCATCTGGCAGTCGTCTCGCTTAACACCAGTCAATATGCTCCTAATGTAGCGCTCCCTTCCTGCTAATGTAGGTTAAAGTAAAAGTGTATCGATCTCTTAATTTGGTTTGGAGCAAAGCTTACtaacaaatctaaaaaataaataaatacgaaaGCGAGAACTCTGTTTCGGGATCAGTGCTTTTTTAACTCTGCGTGGAGTTGGTGGGGCGGGAGAGATAATGGCATTTCCGACCACAGCCGGTTGACCTGGGTGGC

Function

GO: NA

KEGG:

id description
K23964 CCNQ, FAM58A; cyclin-Q

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009575 True 2645 mRNA 0.49 7 41901833 41910118

Neighbor

gene id symbol gene type direction distance location
AMCG00009569 NA coding upstream 57376 41832871 ~ 41844457 (+)
AMCG00009568 NA coding upstream 117296 41775209 ~ 41784537 (+)
AMCG00009564 NA coding upstream 218138 41678552 ~ 41683695 (+)
AMCG00009556 NA coding upstream 313079 41586666 ~ 41588754 (+)
AMCG00009562 NA coding upstream 333001 41560388 ~ 41568832 (+)
AMCG00009577 NA coding downstream 41549 41951667 ~ 41960909 (+)
AMCG00009579 LOC107712727,LOC103384719 coding downstream 69419 41979537 ~ 42029964 (+)
AMCG00009578 NA coding downstream 125900 42036018 ~ 42042211 (+)
AMCG00009581 NA coding downstream 165360 42075478 ~ 42078291 (+)
AMCG00009580 LOC103374679,LOC100699862,LOC108250355,LOC107390564,LOC104941073,LOC106535138,LOC103468062 coding downstream 260228 42170346 ~ 42175700 (+)
G57792 NA non-coding upstream 62367 41839165 ~ 41839466 (+)
G57775 NA non-coding upstream 84038 41815921 ~ 41817795 (+)
G57770 NA non-coding upstream 151689 41749555 ~ 41750144 (+)
G57690 NA non-coding upstream 401615 41499964 ~ 41500218 (+)
G57599 NA non-coding upstream 968623 40932967 ~ 40933210 (+)
G57843 NA non-coding downstream 175161 42085279 ~ 42088145 (+)
G57940 NA non-coding downstream 492117 42402235 ~ 42402452 (+)
G57945 NA non-coding downstream 505472 42415590 ~ 42418109 (+)
G57946 NA non-coding downstream 508023 42418141 ~ 42418505 (+)
G57947 NA non-coding downstream 508472 42418590 ~ 42420823 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other upstream 302709 41596229 ~ 41599124 (+)
G57604 NA other upstream 907174 40990802 ~ 40994659 (+)
AMCG00009516 NA other upstream 1796781 40086474 ~ 40105052 (+)
G57430 NA other upstream 1952633 39948006 ~ 39949200 (+)
AMCG00009480 sst1.1,LOC106579799,LOC105009822,LOC107586749,LOC103023622,LOC107582287 other upstream 2464816 39434900 ~ 39437017 (+)
G57830 NA other downstream 125900 42036018 ~ 42078241 (+)
AMCG00009647 NA other downstream 1526872 43436990 ~ 43444420 (+)
G58324 NA other downstream 2022834 43932952 ~ 43935762 (+)
G58522 NA other downstream 2476379 44386497 ~ 44407568 (+)
AMCG00009694 LOC103385381 other downstream 2651659 44561777 ~ 44570531 (+)

Expression


Co-expression Network